View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14819_high_91 (Length: 227)
Name: NF14819_high_91
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_high_91 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 3951009 - 3951230
Alignment:
| Q |
4 |
cttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggaga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3951009 |
cttgtgtttcccttattgtgacgttcaaggttctagagaca--gaaagattgttcgtagtgcacttgttccaatccaatggcatatttgccttctggagc |
3951106 |
T |
|
| Q |
104 |
ctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaaattgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3951107 |
ctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaatttgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtatg |
3951206 |
T |
|
| Q |
204 |
taattatagttttcagttctatat |
227 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3951207 |
taattatagttttcagttctatat |
3951230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 4005402 - 4005234
Alignment:
| Q |
4 |
cttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggaga |
103 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
4005402 |
cttgtgtttcccttattgcgttattcaaggttctagagacgaagaaagattgttcagagtgcacttgttccagttcaatggcatatttatcttctggaac |
4005303 |
T |
|
| Q |
104 |
ctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaaattgtggttatgaattaatgctga |
173 |
Q |
| |
|
|||||| |||||||||||||| | ||||| |||| || ||| || |||| |||||||||||||||||| |
|
|
| T |
4005302 |
ttctcaactaatatatgctgtaattgctctgtttattaaattcgaatttgt-gttatgaattaatgctga |
4005234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 4013651 - 4013526
Alignment:
| Q |
1 |
aatcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctgg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| | |||||||||| ||||||| ||||||||||| || |
|
|
| T |
4013651 |
aatcttgtgtttcccttattgtgatgttcaaggttctagagacgaagaaagattgttccgtgtgaaattgttccaattcaatggcgtatttgtcttccgg |
4013552 |
T |
|
| Q |
101 |
agactctcaaacaatatatgctgtaa |
126 |
Q |
| |
|
|| ||||||| |||||||||||||| |
|
|
| T |
4013551 |
agcttctcaaataatatatgctgtaa |
4013526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 4215900 - 4215801
Alignment:
| Q |
56 |
ttcatagtgcacttgttccaatccaatggcatatttgtcttctggagactctcaaacaatatatgctgtaaatactctgcttatcaatttcaaaattgtg |
155 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
4215900 |
ttcatactgcacttgttccaaaccaatgtcatatttgtcttctggagcctctcaaacaatatctgctgtaaatactctgattatcaatttctaatttgtg |
4215801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 4027869 - 4027659
Alignment:
| Q |
3 |
tcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggag |
102 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| |||||||| ||||||||| ||||| |||||| |||||||||| ||||||| ||||||| ||| ||| |
|
|
| T |
4027869 |
tcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagag |
4027770 |
T |
|
| Q |
103 |
actctcaaacaatatatgctgtaaatactctgcttatcaatttcaaaattgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtat |
202 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||| || ||| || |||| |||| ||||| || |||||| ||| ||||| |||| || ||||||| |
|
|
| T |
4027769 |
cttctcaaataatttatgctgtaa--tgtctgcttattaaattcgaatttgt-gttacgaattgatcctgaaactttaagatttttcaatgaaacagtat |
4027673 |
T |
|
| Q |
203 |
gtaattatagtttt |
216 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
4027672 |
gtaatcatggtttt |
4027659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 3991341 - 3991243
Alignment:
| Q |
4 |
cttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggag |
102 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| |||| ||||||||||||||| |||| | |||||||||| ||||||| |||||||||| |||| |
|
|
| T |
3991341 |
cttgtgtttcccttattgatatattcaaggttctacagacgaagaaagattgttcagagtgaagttgttccaattcaatggcgcatttgtcttccggag |
3991243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 13400584 - 13400441
Alignment:
| Q |
4 |
cttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggaga |
103 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13400584 |
cttgtgtttcccttattgcgatgttcaaggttcttgagacaaagaaagattgttcatagcgc--ttgttccaatccaatggcatatttttcttctggagc |
13400487 |
T |
|
| Q |
104 |
ctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaa |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13400486 |
ctctccaacaatatatgctgtaaatactctgcttatcaatttcaaa |
13400441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University