View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_10 (Length: 520)
Name: NF14819_low_10
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 40764540 - 40764039
Alignment:
| Q |
1 |
ggcagttcaagattgcacgcactagaaaaataagtttattaccataaaaaacaaagtatttgaattggcattcagctgataatgtggttaatagtgacta |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40764540 |
ggcagttcaagattgcacgcactaaaaaaataagtttattaccctaaaaaacaaagtatttgaattggcattcagctgataatggggttaatagtgacta |
40764441 |
T |
|
| Q |
101 |
atttgatagggagaaaggtgtgagaaaacattgtatttcaaaaaacttcaaacagctatagatgagaataatcataaccagatagtgtgttcctttttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40764440 |
atttgatagggagaaaggtgtgagaaaacattgtatttcaaaaaacttcaaacagctatcgatgagaataatcataaccagatagtgtgttcctttttat |
40764341 |
T |
|
| Q |
201 |
atacctccaagtctgcaaacgcaatttcaggttctaccatccaaaattcagccaaatgcctggaagtgtgagaattctctgcacgaaatgttgggccaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40764340 |
atacctccaagtctgcaaacgcaatttcaggttctaccatccaaaattcagccaaatgcctggaagtgtgagaattctctgcacgaaatgttgggccaaa |
40764241 |
T |
|
| Q |
301 |
tgtatacacactactaagagcacacgcataagactcaacttgaagctgaccagaaacagtcaaaaatgcttgacgggcaaagaaatctttagcataatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40764240 |
tgtatacacactactaagagcacacgcataagactcaacttgaagctgaccagaaacagtcaaaaatgcttgacgggcaaagaaatctttagcataatct |
40764141 |
T |
|
| Q |
401 |
acctttccatcttttcgaggaataccgggctgaagtttagatctttcttccagcttggatacattccgtttagcctttttaagttcatccacagcagcag |
500 |
Q |
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| T |
40764140 |
atctttccatcctttcgaggaatactgggctgaagtttagatctttcttccagcttggatacattccgtttagcttttttaagttcatccacagcagcag |
40764041 |
T |
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| Q |
501 |
ta |
502 |
Q |
| |
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|| |
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| T |
40764040 |
ta |
40764039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 163 - 499
Target Start/End: Complemental strand, 42912029 - 42911689
Alignment:
| Q |
163 |
tgagaataatcataaccagat----agtgtgttcctttttatatacctccaagtctgcaaacgcaatttcaggttctaccatccaaaattcagccaaatg |
258 |
Q |
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|||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42912029 |
tgagaataatcataacaagattgagtgtgtgttcatttttatatacctccaagtctgcaaacgcaatttcaggttctaccatccaaaattcagccaaatg |
42911930 |
T |
|
| Q |
259 |
cctggaagtgtgagaattctctgcacgaaatgttgggccaaatgtatacacactactaagagcacacgcataagactcaacttgaagctgaccagaaaca |
358 |
Q |
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| T |
42911929 |
cctggaagtgtgagaattctctgcacgaaatgtcgggccaaatgtatacacgcgactaagagcacaagcataagactcaacttgaagctgaccagaaaca |
42911830 |
T |
|
| Q |
359 |
gtcaaaaatgcttgacgggcaaagaaatctttagcataatctacctttccatcttttcgaggaataccgggctgaagtttagatctttcttccagcttgg |
458 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42911829 |
gtcaaaaacgcttgacgggcaaagaaatctttagtataatccacctttccgtcctttcgaggaataccgggctgaagtttagatctttcctccagcttgg |
42911730 |
T |
|
| Q |
459 |
atacattccgtttagcctttttaagttcatccacagcagca |
499 |
Q |
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||||||| ||| || |||||||||||| ||||||||||| |
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| T |
42911729 |
atacattttcttttgcttttttaagttcagccacagcagca |
42911689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 42912161 - 42912038
Alignment:
| Q |
1 |
ggcagttcaagattgcacgcactagaaaaataagtttattaccataaaaaacaaagtatttgaattggcattcagctgataatgtggttaatagtgacta |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| || ||||| |||||||||||||||| | || |
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| T |
42912161 |
ggcagttcaagattgcac----tagaaaaataagtttattaccctaaaaaaca--gtatttgaattgacactcagccgataatgtggttaataacaaata |
42912068 |
T |
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| Q |
101 |
atttgatagggagaaaggtgtgagaaaaca |
130 |
Q |
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||||||||| | |||| |||||||||||| |
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| T |
42912067 |
atttgatagcgttaaagatgtgagaaaaca |
42912038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 41661931 - 41661999
Alignment:
| Q |
241 |
ccaaaattcagccaaatgcctggaagtgtgagaattctctgcacgaaatgttgggccaaatgtatacac |
309 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||| |||||||| || |||||||||||||| |
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| T |
41661931 |
ccaaaattcagccaagtgcctggaagtgttagaattctctgctcgaaatgtgggaccaaatgtatacac |
41661999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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