View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_100 (Length: 222)
Name: NF14819_low_100
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_100 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 34790098 - 34789913
Alignment:
| Q |
22 |
atggttcatagatgtggtatgcatcagaagatgacaacaaaagagaaagagaaatcacattagaagcttccataggcaataaatgctacgatttggcttt |
121 |
Q |
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| T |
34790098 |
atggttcatagatgtggtatgcatcagaagatgacaacaaaagagaaagagaaatcacattagaagcttccataggcaataaatgctacgatttggcttt |
34789999 |
T |
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| Q |
122 |
tgtacaataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggcaattgcaagatcaaat |
207 |
Q |
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| T |
34789998 |
tgtacaataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggcaattgcaagctcaaat |
34789913 |
T |
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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 2288943 - 2289023
Alignment:
| Q |
127 |
aataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggcaattgcaagatcaaat |
207 |
Q |
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| T |
2288943 |
aataaataaataaattttatgtgtaccttccacaacaactcaggcatgtccaatgctggttgggcaattgcaagctcaaat |
2289023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 2288665 - 2288726
Alignment:
| Q |
22 |
atggttcatagatgtggtatgcatcagaagatgacaacaaaagagaaagagaaatcacatta |
83 |
Q |
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| T |
2288665 |
atggttcatagatatggtatgcatcagaagatgacaacaaaggagaaagagaaatcacatta |
2288726 |
T |
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