View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14819_low_104 (Length: 215)
Name: NF14819_low_104
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_104 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 42301682 - 42301499
Alignment:
| Q |
15 |
aatatccttatattcatgcatgcgaggagaatcaactaaactcttcacatgcatgcgagtgaaaattgtctacacacaagatagcaagaaagctaaagaa |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42301682 |
aatatccttatattcatgcatgcaaggagaatcaactaaactcttcacatgcatgcgagtgaaaattgtctacacacaagatagcaagaaagctaaagaa |
42301583 |
T |
|
| Q |
115 |
tatttgcactcacttaaatctcaaccaaattattaccatagcattgtatgaggtggtcgtcatgcaaatattgaagtggaaaag |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42301582 |
tatttgcactcacttaaatctcaaccaaattattaccatagcattgcatgaggtggtcgtcgtgcaaatattgaagtggaaaag |
42301499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University