View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_105 (Length: 210)
Name: NF14819_low_105
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 35034018 - 35034178
Alignment:
| Q |
19 |
agatgtcgggcaaaaaatagtgatccgagttgaaagcgatgaagacattttggatgatggttattgttggcgcaagtacggatgcaaagagatcaaagga |
118 |
Q |
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| T |
35034018 |
agatgccgggcaaaaaatagtgatccgagttgaaagcgatgaagacattttggatgatggttattgttggcgcaagtacggatgcaaagagatcaaagga |
35034117 |
T |
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| Q |
119 |
aatcctaacaatcctaggtaactatttacctattttatatgtgtcaatgcaagtatgtgta |
179 |
Q |
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| T |
35034118 |
aatcctaacaatcctaggtaactatttacctattttatatgtgtcaatgcaagtatgtgta |
35034178 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 32571357 - 32571517
Alignment:
| Q |
31 |
aaaaatagtgatccgagttgaaagcgatgaagacattttggatgatggttattgttggcgcaagtacggatgcaaagagatcaaaggaaatcctaacaat |
130 |
Q |
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| T |
32571357 |
aaaagtagtgttcagaattgaaatcaatgaagacaaagtgaatgatggttatcgctggcataagtatggacgcaaggagatcaaaggaaatgctaattac |
32571456 |
T |
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| Q |
131 |
cctaggtaactatttacctattttatatgtgtcaatgcaagtatgtgtatattgataaatg |
191 |
Q |
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| T |
32571457 |
cctaggtaattatttacctttttccctggtgccaatgcaagtatatgtatatttataaatg |
32571517 |
T |
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