View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14819_low_107 (Length: 206)
Name: NF14819_low_107
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_107 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 8458384 - 8458541
Alignment:
| Q |
33 |
ttttaagaaattaaattaaatttttaaaagcttatgatatgctcatttgtggtgttgttatataattcaaaaaatatttaaaattaactatttttctaga |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8458384 |
ttttaagaaattaaattaaatttttaaaagcttatgatatgctcatttgtggtgttgttatataattcaaaaaatatttaaaattaattatttttctaga |
8458483 |
T |
|
| Q |
133 |
aaagatgctttagttcacacaaatacgacaataactttaagaaaatacctctaaaaac |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458484 |
aaagatgctttagttcacacaaatacgacaataactttaagaaaatacctctaaaaac |
8458541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 777045 - 776924
Alignment:
| Q |
33 |
ttttaagaaattaaattaaatttttaaaagcttatgatatgctcatttgtggtgttgttatataattcaaaaaatatttaaaattaactatttttctaga |
132 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
777045 |
ttttaagaaatttaattcagtttttaaaagcttatgatatgctcatttgtggtgttgttatataattcaaaaaatctttaaaattaattatttttctaga |
776946 |
T |
|
| Q |
133 |
aaagatgctttagttcacacaa |
154 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
776945 |
aaagatactttagttcacacaa |
776924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 776845 - 776807
Alignment:
| Q |
152 |
caaatacgacaataactttaagaaaatacctctaaaaac |
190 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
776845 |
caaatatgacaataactttaagaaaatacttctaaaaac |
776807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University