View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_low_108 (Length: 206)

Name: NF14819_low_108
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_low_108
NF14819_low_108
[»] chr2 (2 HSPs)
chr2 (16-190)||(2038724-2038895)
chr2 (16-189)||(29963271-29963438)
[»] scaffold0172 (1 HSPs)
scaffold0172 (16-190)||(34827-34998)
[»] chr7 (3 HSPs)
chr7 (131-190)||(16931639-16931698)
chr7 (131-190)||(16937022-16937081)
chr7 (131-179)||(16955571-16955619)
[»] chr6 (1 HSPs)
chr6 (145-179)||(24540488-24540522)
[»] chr4 (2 HSPs)
chr4 (145-179)||(15418765-15418799)
chr4 (145-179)||(15425782-15425816)
[»] chr3 (1 HSPs)
chr3 (145-179)||(3224581-3224615)
[»] chr1 (1 HSPs)
chr1 (147-177)||(18153242-18153272)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 2038724 - 2038895
Alignment:
Q  16 atgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagttagtattctttagtagaatctaagccttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  2038724 atgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagtta---ttctttagtagaatctaagccttg 2038820  T
Q  116 agtgataattagggcgtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtgg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2038821 agtgataattagggcgtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtgg 2038895  T

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Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 29963438 - 29963271
Alignment:
Q  16 atgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagttagtattctttagtagaatctaagccttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||   |||    
T  29963438 atgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagtta---ttctttagtagaatctaa---ttg 29963345  T
Q  116 agtgataattagggcgtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29963344 agtgataattagggcgtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatagatgtagtg 29963271  T

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Target: scaffold0172 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 34998 - 34827
Alignment:
Q  16 atgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagttagtattctttagtagaatctaagccttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  34998 atgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagtaagttgtagtgagtta---ttctttagtagaatctaagccttg 34902  T
Q  116 agtgataattagggcgtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtgg 190  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  34901 agtgataattagggcgtaactgagatttaaaactaacctagtaaacatttaattgtgaaagtatggatgtagtgg 34827  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 16931698 - 16931639
Alignment:
Q  131 gtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtgg 190  Q
    |||| ||| |||||||||||| ||||||||||||||| ||||||||||| || |||||||    
T  16931698 gtaagtgaaatttaaaactaaactagtaaatatttaaatgtgaaggtatagaggtagtgg 16931639  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 16937081 - 16937022
Alignment:
Q  131 gtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtgg 190  Q
    |||| ||| |||||||||||| ||||||||||||||| ||||||||||| || |||||||    
T  16937081 gtaagtgaaatttaaaactaaactagtaaatatttaaatgtgaaggtatagaggtagtgg 16937022  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 16955619 - 16955571
Alignment:
Q  131 gtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtat 179  Q
    |||| ||| |||||||||||| ||||||||||||||| |||||||||||    
T  16955619 gtaagtgaaatttaaaactaaactagtaaatatttaaatgtgaaggtat 16955571  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 24540488 - 24540522
Alignment:
Q  145 aaactaagctagtaaatatttaattgtgaaggtat 179  Q
    |||||||||||||||||||||||||||||||||||    
T  24540488 aaactaagctagtaaatatttaattgtgaaggtat 24540522  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 15418765 - 15418799
Alignment:
Q  145 aaactaagctagtaaatatttaattgtgaaggtat 179  Q
    |||||||||||||||||||||||||||||||||||    
T  15418765 aaactaagctagtaaatatttaattgtgaaggtat 15418799  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 15425782 - 15425816
Alignment:
Q  145 aaactaagctagtaaatatttaattgtgaaggtat 179  Q
    |||||||||||| ||||||||||||||||||||||    
T  15425782 aaactaagctagaaaatatttaattgtgaaggtat 15425816  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 3224581 - 3224615
Alignment:
Q  145 aaactaagctagtaaatatttaattgtgaaggtat 179  Q
    |||||||||||||||||||||||||||||||||||    
T  3224581 aaactaagctagtaaatatttaattgtgaaggtat 3224615  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 18153242 - 18153272
Alignment:
Q  147 actaagctagtaaatatttaattgtgaaggt 177  Q
    |||||||||||||||||||||||||||||||    
T  18153242 actaagctagtaaatatttaattgtgaaggt 18153272  T

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