View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_11 (Length: 519)
Name: NF14819_low_11
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_11 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 8777345 - 8777865
Alignment:
| Q |
1 |
atacttcttttggattttcaacttctattcttattatagctcaactctttcgatgctcaatctgatttcaggcctctatcatatatttgtttcgtaattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8777345 |
atacttcttttggattttcaacttctattcttattatagctcaactctttcgatgctcaatctgatttcaggcctctatcaaatatttgtttcgtaattg |
8777444 |
T |
|
| Q |
101 |
tgcagatctagtaaaagttattgccgagttcaaggaacaacatagggttttgtttctcttgcgaggannnnnnnnctgggtggaagtaagtcaataaatt |
200 |
Q |
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| T |
8777445 |
tgcagatctagtaaaagttattaccgagttcaaggaacaacatagggttttgtttctcttgcgaggattttttttctgggtggaagtaagtcaataaatt |
8777544 |
T |
|
| Q |
201 |
tatgttcacataatttcctgtattaatgattattttcgtgacatggcataaacttttgatgcaattccctagattattgtagagttttatttggtgcatt |
300 |
Q |
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| T |
8777545 |
tatgttcacataatttcctgtattaatgattattttcgtgacatggcataaacttttgatgcaattccctagattattgtacagttttatttggtgcatt |
8777644 |
T |
|
| Q |
301 |
gtttcataactcaacttttgatgtttttgtatcgaacacagataaata--tgagtttcatgtatacatctgctaattgttgtgaattgtttacgttggaa |
398 |
Q |
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| T |
8777645 |
gtttcataattcaacttttgatgtttttgtatcgaacacagataaatatgtgagtttcatgtatacatctgctaatcgttgtgaattgtttacgttggaa |
8777744 |
T |
|
| Q |
399 |
gttattttgatgtacttttgtctgtccatttttgcagaaagtgagcctcttgggaaggtttcagccttggcgtgacgaatcatgtttagagatattgcga |
498 |
Q |
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| T |
8777745 |
gttattttgatgtacttttgtctgtccatttttgcagaaagtgagcctcttgggaaggtttcagccttggcgtgacgaatcatgtttagagatattgcaa |
8777844 |
T |
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| Q |
499 |
aaaatataaaaatggtatctc |
519 |
Q |
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| T |
8777845 |
aaaatataaaaatggcatctc |
8777865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 8789446 - 8789552
Alignment:
| Q |
4 |
cttcttttggattttcaacttctattcttattatagctcaactctttcgatgctcaatctgatttcaggcctctatcatatatttgtttcgtaattgtgc |
103 |
Q |
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||||| |||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||| || ||||||||||| ||||||||| |
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| T |
8789446 |
cttctattggattttcaacttctattcttattatcgttcaactctttctattctcaatctgatttcaggcctctaacaaatatttgtttcataattgtgc |
8789545 |
T |
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| Q |
104 |
agatcta |
110 |
Q |
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||||||| |
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| T |
8789546 |
agatcta |
8789552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 8783391 - 8783501
Alignment:
| Q |
4 |
cttcttttggattttcaacttctattcttattatagctcaactctttcgatgctcaatctgatttcaggcctctatcatatatttgttt----cgtaatt |
99 |
Q |
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||||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||| |||||| |
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| T |
8783391 |
cttctattggattttcaacttctattctcattattgctcaactctttctatgctcaatctgattactggcctctatcaaatatttgttttgtatgtaatt |
8783490 |
T |
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| Q |
100 |
gtgcagatcta |
110 |
Q |
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||||||||||| |
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| T |
8783491 |
gtgcagatcta |
8783501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 368 - 509
Target Start/End: Original strand, 8784461 - 8784602
Alignment:
| Q |
368 |
tgctaattgttgtgaattgtttacgttggaagttattttgatgtacttttgtctgtccatttttgcagaaagtgagcctcttgggaaggtttcagccttg |
467 |
Q |
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|||||| ||||||||| || || | |||||||||| |||||||||||||||||||| |||||||||||| ||| | | | ||||| ||||||||||| |
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| T |
8784461 |
tgctaactgttgtgaactgcttgcaatggaagttatcttgatgtacttttgtctgtcgatttttgcagaacgtgtgtcacatgggatcatttcagccttg |
8784560 |
T |
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| Q |
468 |
gcgtgacgaatcatgtttagagatattgcgaaaaatataaaa |
509 |
Q |
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| T |
8784561 |
gcttgacgagtcatgtttggagttaatgcgaaaaatttaaaa |
8784602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 494
Target Start/End: Complemental strand, 9584337 - 9584220
Alignment:
| Q |
377 |
ttgtgaattgtttacgttggaagttattttgatgtacttttgtctgtccatttttgcagaaagtgagcctcttgggaaggtttcagccttggcgtgacga |
476 |
Q |
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| T |
9584337 |
ttgtgaattgcttgcgatggaagttatcttgatgcacttttctctgtccgtttttgcataatgtgtgccatttgggaacattgcagccttggcttgacga |
9584238 |
T |
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| Q |
477 |
atcatgtttagagatatt |
494 |
Q |
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| T |
9584237 |
atcatgattagagatatt |
9584220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 519
Target Start/End: Original strand, 8790566 - 8790688
Alignment:
| Q |
397 |
aagttattttgatgtacttttgtctgtccatttttgcagaaagtgagcctcttgggaaggtttcagccttggcgtgacgaatcatgtttagagatattgc |
496 |
Q |
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|||||||||||||||||||||||||| | |||||||||||| ||| ||| | |||| ||||||||||||| |||||| || ||||| ||| || ||| |
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| T |
8790566 |
aagttattttgatgtacttttgtctgccgatttttgcagaatgtgtgccacatgggttcatttcagccttggcttgacgagtcttgtttggagttaatgc |
8790665 |
T |
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| Q |
497 |
gaaaaatataaaaatggtatctc |
519 |
Q |
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| T |
8790666 |
gaaaactgtaaaattggaatctc |
8790688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 8790472 - 8790523
Alignment:
| Q |
269 |
ctagattattgtagagttttatttggtgcattgtttcataactcaacttttg |
320 |
Q |
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| T |
8790472 |
ctagattattctacagttttgtttggtgcattgtttcataattcaacatttg |
8790523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 2540479 - 2540302
Alignment:
| Q |
48 |
tttcgatgctcaatctgatttcaggcctctatcatatatttgtttcgtaattgtgcagatctagtaaaagttattgccgagttcaaggaacaacataggg |
147 |
Q |
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| T |
2540479 |
tttctatgctcaatctgatttccggcctctatcaaatatttgtttcataattatgcagatctagtaaaagttattgcccagttcaaggaacagcataggg |
2540380 |
T |
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| Q |
148 |
ttttgtttctcttgcgaggannnnnnnnctgggtggaagtaagtcaataaatttatgttcacataatttcctgtatta |
225 |
Q |
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|||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2540379 |
ttttgtttctcttgcgaggattttttttctggttgcaagtaagtcgataaatttatgttcacataatttcctgtatta |
2540302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 518
Target Start/End: Complemental strand, 2540067 - 2539915
Alignment:
| Q |
366 |
tctgctaattgttgtgaattgtttacgttggaagttattttgatgtacttttgtctgtccatttttgcagaaagtgagcctcttgggaaggtttcagcct |
465 |
Q |
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|||||||| |||||| ||||| || | |||||||||| |||||||| |||| ||||||||||| |||||| |||||||||| ||||| ||||||||| |
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| T |
2540067 |
tctgctaactgttgttaattgcttgcaatggaagttatgttgatgtatttttctctgtccatttgtgcagagagtgagcctcgctggaagatttcagcct |
2539968 |
T |
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| Q |
466 |
tggcgtgacgaatcatgtttagagatattgcgaaaaatataaaaatggtatct |
518 |
Q |
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|||||||||||| ||||||| ||||||||||| ||||| ||||||||| |||| |
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| T |
2539967 |
tggcgtgacgaaacatgtttggagatattgcggaaaatgtaaaaatggaatct |
2539915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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