View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_13 (Length: 516)
Name: NF14819_low_13
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 210 - 501
Target Start/End: Complemental strand, 3063977 - 3063687
Alignment:
| Q |
210 |
agcagaagaagaggaagcccgtcgattatcagaagcggctcttgctnnnnnnnnnngcagaagaagaggaagcctgtcgattagcaaaagaggctcttgc |
309 |
Q |
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| T |
3063977 |
agcagaagaagaggaagcccgtcgattagcagaagaggcttttgctaaaaagaaa-gcagaagaagaggaagcccgtcgattagcaaaagaagctcttgc |
3063879 |
T |
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| Q |
310 |
tcnnnnnnnnctgcagtcccgcaaagcaaaagaggcagcagaaaagactcttactctaaattcactctgggcattggctgatgcatttcagcgtcgttcc |
409 |
Q |
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| T |
3063878 |
tcaaaaaaaactgcaggcccgcaaagcaaaagaggcagcagaaaagactcttactctaaattcactctgggcattggctgatgcatttcagcgtcgttcc |
3063779 |
T |
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| Q |
410 |
ttcccagacatgactagagaaacactttttcgaaaacttgttaaacttaacccagccgtaggttttcttaaaaattgctctaggattgtctt |
501 |
Q |
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| T |
3063778 |
ttcccagacatgactagagaaacactttttcgaaaacttgttaaacttaacccagccgtaggttttcttaaaatttgctctaggattgtctt |
3063687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 3064075 - 3063932
Alignment:
| Q |
166 |
tatttgtatttgtaggtactatctgatatacaagccaaaaaagtagcagaagaagaggaagcccgtcgattatcagaagcggctcttgctnnnnnnnnnn |
265 |
Q |
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| T |
3064075 |
tatttgtatttgtaggtactatctgatatacaagccaaaaaagtagcagaagaagaggaagcccgtcgattagcagaagaggctcttgct-aaaaaaaaa |
3063977 |
T |
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| Q |
266 |
gcagaagaagaggaagcctgtcgattagcaaaagaggctcttgct |
310 |
Q |
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| T |
3063976 |
gcagaagaagaggaagcccgtcgattagcagaagaggcttttgct |
3063932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3064148 - 3064088
Alignment:
| Q |
1 |
tactaatctggatggataaaactcacatatgatttgatatgaattgttaatttggttatgg |
61 |
Q |
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| T |
3064148 |
tactactctggatgaataaaactcacatatgatatgatataaattgttaatttggttatgg |
3064088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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