View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_low_14 (Length: 497)

Name: NF14819_low_14
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_low_14
NF14819_low_14
[»] chr1 (21 HSPs)
chr1 (25-493)||(5126107-5126575)
chr1 (20-97)||(48034710-48034787)
chr1 (25-98)||(48050607-48050680)
chr1 (25-97)||(48033102-48033174)
chr1 (25-97)||(48035757-48035829)
chr1 (25-97)||(48041323-48041395)
chr1 (25-97)||(48055942-48056014)
chr1 (25-97)||(29812825-29812897)
chr1 (25-97)||(48040172-48040244)
chr1 (25-97)||(48042834-48042906)
chr1 (25-97)||(48049406-48049478)
chr1 (25-92)||(48036725-48036792)
chr1 (24-96)||(48042225-48042297)
chr1 (25-97)||(48053126-48053198)
chr1 (25-96)||(39972786-39972857)
chr1 (24-93)||(48050016-48050085)
chr1 (25-97)||(22908323-22908395)
chr1 (25-97)||(48054678-48054750)
chr1 (38-97)||(29813662-29813721)
chr1 (25-97)||(48048641-48048714)
chr1 (27-86)||(48054322-48054381)
[»] chr4 (4 HSPs)
chr4 (158-338)||(40141328-40141511)
chr4 (19-97)||(49152529-49152607)
chr4 (25-96)||(38393563-38393634)
chr4 (35-91)||(26929299-26929355)
[»] chr2 (7 HSPs)
chr2 (20-102)||(7181558-7181640)
chr2 (25-102)||(6796491-6796568)
chr2 (23-96)||(13326994-13327067)
chr2 (25-97)||(35926125-35926197)
chr2 (25-96)||(6801054-6801125)
chr2 (25-96)||(39990580-39990651)
chr2 (25-97)||(35920134-35920206)
[»] chr3 (7 HSPs)
chr3 (21-97)||(47565673-47565749)
chr3 (22-96)||(53682982-53683056)
chr3 (25-96)||(34974803-34974874)
chr3 (25-97)||(31125752-31125824)
chr3 (24-96)||(38930470-38930542)
chr3 (25-96)||(53107639-53107710)
chr3 (50-87)||(32170503-32170540)
[»] chr6 (7 HSPs)
chr6 (25-96)||(992442-992513)
chr6 (20-97)||(10754592-10754669)
chr6 (25-97)||(10750280-10750352)
chr6 (42-97)||(32678635-32678690)
chr6 (24-96)||(18613088-18613160)
chr6 (25-97)||(10748684-10748756)
chr6 (158-200)||(29089226-29089268)
[»] chr7 (4 HSPs)
chr7 (23-96)||(23780469-23780542)
chr7 (25-96)||(43920607-43920678)
chr7 (24-96)||(40706106-40706178)
chr7 (35-91)||(46064798-46064854)


Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 25 - 493
Target Start/End: Complemental strand, 5126575 - 5126107
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctattgttgctaagcttttgtataaaaca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||||    
T  5126575 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttatgttaagcttttgtataaaaca 5126476  T
Q  125 taatatatattaaaactcatatgtaccaacgaagcatagctgcatattagatttgttgtagtgggacatgatataagctgtcatcataatggaatggttg 224  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5126475 taatatatattaaaactcatatgtaccaacaaggcatagctgcatattagatttgttgtagtgggacataatataagctgtcatcataatggaatggttg 5126376  T
Q  225 ggataggtaagactaagatagcaatgatgaatttttacgttcatgaatctattaatataaattttgtctattgaataattaagtttatataggctcattt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126375 ggataggtaagactaagatagcaatgatgaatttttacgttcatgaatctattaatataaattttgtctattgaataattaagtttatataggctcattt 5126276  T
Q  325 tgttgagttatattggtaaagttatacaaatgttgtgatatgctgacttcaatgatggtagagaatctagatcagacaacaaccattgcacgtaaaagtt 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126275 tgttgagttatattggtaaagttatacaaatgttgtgatatgctgacttcaatgatggtagagaatctagatcagacaacaaccattgcacgtaaaagtt 5126176  T
Q  425 acaccacacccaactcatcagtttatgttgttgcctaattacattgtttgtcgcctttgttttcttctc 493  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  5126175 acaccacacccaactcatcattttatgttgttgcctaattacattgtttgtcacctttattttcttctc 5126107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 48034787 - 48034710
Alignment:
Q  20 aaattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034787 aaattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48034710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 48050680 - 48050607
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48050680 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccta 48050607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48033174 - 48033102
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033174 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48033102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48035829 - 48035757
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48035829 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48035757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48041395 - 48041323
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48041395 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48041323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48056014 - 48055942
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48056014 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48055942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 29812825 - 29812897
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812825 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 29812897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48040244 - 48040172
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48040244 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48040172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48042906 - 48042834
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48042906 ggggcattcagagaatcgaactccgggcctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48042834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48049478 - 48049406
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049478 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48049406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 48036792 - 48036725
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaat 92  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48036792 ggggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaat 48036725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 48042297 - 48042225
Alignment:
Q  24 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    |||||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48042297 tggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 48042225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48053198 - 48053126
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48053198 ggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatgccct 48053126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 39972786 - 39972857
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39972786 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 48050085 - 48050016
Alignment:
Q  24 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 93  Q
    |||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||    
T  48050085 tggggcattccgagaatcgaactcggaacctctcacacccaaagcgagaatcataccactagaccaaatg 48050016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 22908395 - 22908323
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||| ||||||  |||||||||||||| |||||||||||||||||||||||||||||||||    
T  22908395 ggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 22908323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48054750 - 48054678
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||| |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  48054750 ggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccct 48054678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 29813662 - 29813721
Alignment:
Q  38 aatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29813662 aatcgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 29813721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 48048714 - 48048641
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccacta-gaccaaatgccct 97  Q
    ||||||||| ||||||| ||||  |||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  48048714 ggggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatgccct 48048641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 48054381 - 48054322
Alignment:
Q  27 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactaga 86  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||  |||||||    
T  48054381 ggcattctgagaatcgaactcaggacctctcgcacccaaagcgagaatcatttcactaga 48054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 158 - 338
Target Start/End: Original strand, 40141328 - 40141511
Alignment:
Q  158 gcatagctgcatattagatttgttgtagtgggacatgatataagctgtcatcataatggaatggttgggataggtaagactaagatagcaatgatgaatt 257  Q
    ||||| || |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  40141328 gcataacttcatattagatttgttgtagtggaacataatataagctgtcatcataatggaatggttgggataggtaagactaagatggcaatcatgaatt 40141427  T
Q  258 tttacgttcatgaatctattaatataaattttgtctattgaataattaagt---ttatataggctcattttgttgagttatatt 338  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  40141428 tttacgttcatgaatctcttagtatagattttgtctattgaataattaagttgattatataggctcattttgttgagttatatt 40141511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 49152529 - 49152607
Alignment:
Q  19 gaaattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49152529 gaaaatggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 49152607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 38393563 - 38393634
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38393563 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 26929299 - 26929355
Alignment:
Q  35 gagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaa 91  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  26929299 gagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 7181640 - 7181558
Alignment:
Q  20 aaattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctattgt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7181640 aaattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccttttgt 7181558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 6796568 - 6796491
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6796568 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccttttgt 6796491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 13326994 - 13327067
Alignment:
Q  23 ttggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13326994 ttggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 13327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 35926125 - 35926197
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35926125 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 35926197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 6801054 - 6801125
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6801054 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 6801125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 39990651 - 39990580
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39990651 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39990580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 35920134 - 35920206
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||| |||||  ||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  35920134 ggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccct 35920206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 47565673 - 47565749
Alignment:
Q  21 aattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47565673 aattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 47565749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 53683056 - 53682982
Alignment:
Q  22 attggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53683056 attggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 34974874 - 34974803
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974874 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 31125824 - 31125752
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31125824 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 31125752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 38930470 - 38930542
Alignment:
Q  24 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    |||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38930470 tggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 53107710 - 53107639
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53107710 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 53107639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 32170540 - 32170503
Alignment:
Q  50 gacctctcgcacccaaagcgagaatcataccactagac 87  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  32170540 gacctctcgcaccccaagctagaatcataccactagac 32170503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 992442 - 992513
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  992442 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 992513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 10754592 - 10754669
Alignment:
Q  20 aaattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||| ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10754592 aaataggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 10754669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 10750280 - 10750352
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||| |||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  10750280 ggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccct 10750352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 32678635 - 32678690
Alignment:
Q  42 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32678635 gaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatgccct 32678690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 18613160 - 18613088
Alignment:
Q  24 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    |||||||||| ||||||  ||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  18613160 tggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgccc 18613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 10748684 - 10748756
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 97  Q
    ||||||||| |||||| || |||  |||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  10748684 ggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgccct 10748756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 29089226 - 29089268
Alignment:
Q  158 gcatagctgcatattagatttgttgtagtgggacatgatataa 200  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  29089226 gcatagcttcatattagatttgttgtagtgggacataatataa 29089268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 23780542 - 23780469
Alignment:
Q  23 ttggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23780542 ttggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 23780469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 43920678 - 43920607
Alignment:
Q  25 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43920678 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 43920607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 40706178 - 40706106
Alignment:
Q  24 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 96  Q
    |||||||||| |||||| |||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  40706178 tggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgccc 40706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 46064798 - 46064854
Alignment:
Q  35 gagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaa 91  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  46064798 gagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University