View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_20 (Length: 473)
Name: NF14819_low_20
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Complemental strand, 4567475 - 4567021
Alignment:
| Q |
17 |
aatatggtgggactatgtagaccttagaacaaattaaaatgagaatcatagatgagtgagatggcaatattaaattctagaattgcagcaagcatatcaa |
116 |
Q |
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| T |
4567475 |
aatatggtgggactatgtagaccttagaacaaattaaaatgagaatcataaatgagtgagatggcaatattaaattctagaattgcagcaagcatatcaa |
4567376 |
T |
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| Q |
117 |
ttattttaatgtgtacgacaaatccagtgtggatatgaggatgatttgattgattactaatac----tagtaactaccaaacataaaataatgggaaatc |
212 |
Q |
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| T |
4567375 |
ttattttaatgtgtacgacaaatctagtgtggatatgaggatgatttgattgattactaatacgtactagtaactaccaaacataaaataatggcaaatc |
4567276 |
T |
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| Q |
213 |
ttcaattaatggcttttgtttacatttaattaatctaaaacgtaaaaaatggattggagtatataatgatgatgatggttcgtgcacatgctctggccta |
312 |
Q |
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| T |
4567275 |
ttcaattaatggcttttgtttacatttaattaatctaaaacgtaaaaaatggattggagtatataatgatgatgatggttcgtgcacatgctctggccta |
4567176 |
T |
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| Q |
313 |
tcatctttatatctggaaagtttcacatgcacctgacgtaactaatggacctacaacttattttgattaatatttcatgtcttcacagattaggttgatt |
412 |
Q |
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| T |
4567175 |
tcatctttatatctggaaagtttcacatgcacctgacgtaactaatggacctacaacttattttgattaatatttcatgtcttcacagattaggttgatt |
4567076 |
T |
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| Q |
413 |
aggtattatgttatcatattatat-ttaagattatagggcctaaagtttcttatc |
466 |
Q |
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| T |
4567075 |
aggtattatgttatcatattatatgttaagatcctatggcctaaagtttcttatc |
4567021 |
T |
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