View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_21 (Length: 449)
Name: NF14819_low_21
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 31121851 - 31121427
Alignment:
| Q |
18 |
agtaggtagtaagagtaacgataactttttaaaaactcatgtagtttacttcttattttcaattattcaatacttttaattttagtgataagtaatacac |
117 |
Q |
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| T |
31121851 |
agtaggtagtaagagtaacgataactttttgaaaactcatgtagtttacttcttattttcaattattcaatacttttaattttagtgataagtaatacac |
31121752 |
T |
|
| Q |
118 |
tttaaataaacattgaaagactatagaattagttgacaaaaatatcatttttcaaaggaagataatttattaattaaattgacactcatggccattttac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31121751 |
tttaaataaacattgaaagactatagaattagttgacaaaaatataatatttcataggaagataatttattaattaaattgacactcatggccattttac |
31121652 |
T |
|
| Q |
218 |
aaccatcccctactaaaatttgaaacaataccttgaaagtgcaaggctaagctcttgcatccattaattggatatttttattaaaagaacgacactcacc |
317 |
Q |
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| T |
31121651 |
aaccatcccctactaaaatttgaaacaataccttgaaagtgcaaggctaagctcttgcatccattaattggatatttttattaaaagaacgacactcacc |
31121552 |
T |
|
| Q |
318 |
gttcaaacatcctccatctacgtttattttccatgagcaatctctacaaccatcattttttgcatcgtaaacgtcaagataatgaagattggggtcttgt |
417 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31121551 |
gttcaaacatcctccatctacatttattttccatgagcaatctctacaatcgtcattttttgcatcgtaaacgtcaagataatgaagattggggtcttgt |
31121452 |
T |
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| Q |
418 |
ggccatgtaaaactacagaagaata |
442 |
Q |
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| T |
31121451 |
ggccatgtaaaactacagaagaata |
31121427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 6613655 - 6613566
Alignment:
| Q |
183 |
tttattaattaaattgacact-catggccattttacaaccatcccctactaaaatttgaaacaataccttgaaagtgcaaggctaagctc |
271 |
Q |
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| T |
6613655 |
tttattaattaaattggcattacatagccattttacaaccgtcaaatgctaagatttgaaagaataccttgaaagtacaaggctaagctc |
6613566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 9145869 - 9145931
Alignment:
| Q |
382 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataat |
444 |
Q |
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| T |
9145869 |
tcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataat |
9145931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 9180563 - 9180501
Alignment:
| Q |
382 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataat |
444 |
Q |
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| T |
9180563 |
tcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataat |
9180501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 6608764 - 6608703
Alignment:
| Q |
382 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataa |
443 |
Q |
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||||||| ||||||||||| || || ||||| ||| |||||||||||||| ||| ||||||| |
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| T |
6608764 |
tcgtaaatgtcaagataataaacatgggggttttgaggccatgtaaaactgcaggagaataa |
6608703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 6614158 - 6614118
Alignment:
| Q |
129 |
attgaaagactatagaattagttgacaaaaatatcattttt |
169 |
Q |
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|||||||||||| ||||||| ||||||||||||| |||||| |
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| T |
6614158 |
attgaaagactagagaattatttgacaaaaatataattttt |
6614118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 17373706 - 17373743
Alignment:
| Q |
313 |
tcaccgttcaaacatcctccatctacgtttattttcca |
350 |
Q |
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|||||||||||||||||||||| || |||||||||||| |
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| T |
17373706 |
tcaccgttcaaacatcctccatttaagtttattttcca |
17373743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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