View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_23 (Length: 425)
Name: NF14819_low_23
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 84 - 261
Target Start/End: Original strand, 284257 - 284434
Alignment:
| Q |
84 |
gccttagtctcaatctcaaacataaatatataatttttatattgtacctgagaagtgatccaacattagaaaaggatccaagttcttcaactcacttctg |
183 |
Q |
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| T |
284257 |
gccttagtctcaatctcaaacataaatatataatttttatattatacctgagaagtgatccaacattagaaaaggatccaagttcttcaactcacttctg |
284356 |
T |
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| Q |
184 |
ataatcacatcacataaatcatatcaaaggaatgcacaagaacatgaatattgcaacattcaattcatatttattgat |
261 |
Q |
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| T |
284357 |
ataatcacatcacataaatcatatcaaaggaatgcacaagaacatgaatattgcaacattcaattcatatttattgat |
284434 |
T |
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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 284494 - 284583
Alignment:
| Q |
321 |
ccttccaatgcctcttctaacaacagcaccatctccttcacgttgagatttggctaaaaacttgttaagaacaaacctgggggtgttaaa |
410 |
Q |
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| T |
284494 |
ccttccaatgcctcttctaacaacagcaccatctccttcacgttgagatttggctaaaaacttgttaagaacaaacctgggggtgttaaa |
284583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 41166481 - 41166419
Alignment:
| Q |
321 |
ccttccaatgcctcttctaacaacagcaccatctccttcacgttgagatttggctaaaaactt |
383 |
Q |
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| T |
41166481 |
ccttcctatgcttcttctaacaacagcaccaacaccttctcgttgaggtttggctaagaactt |
41166419 |
T |
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