View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_32 (Length: 389)
Name: NF14819_low_32
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 13609677 - 13610049
Alignment:
| Q |
1 |
gagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggcttagttatgatggactaaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609677 |
gagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggcttagttatgatggactaaagga |
13609776 |
T |
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| Q |
101 |
tatagaaaaggagatttttctggatattgcttgtttctttgatgnnnnnnnnnnnncatacgtgaagaaagttttagattttcgtggatttcatcccgaa |
200 |
Q |
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| T |
13609777 |
tatagaaaaggagatttttctggatattgcttgtttctttgatagagagagcgagacatacgtgaagaaagttttagattttcgtggatttcatcccgaa |
13609876 |
T |
|
| Q |
201 |
attggcttaagagttctctttgataaatcattaataacctatgggaggttttctacgatttctatgcatcgtttgttaaaagaacttggcaggagtatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609877 |
attggcttaagagttctctttgataaatcattaataacctatgggaggttttctacgatttctatgcatcgtttgttaaaagaacttggcaggagtatca |
13609976 |
T |
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| Q |
301 |
ttaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggaccacaaggatgtccacaatgttat |
373 |
Q |
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| T |
13609977 |
ttaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggaccacaaggatgtccacaatgttat |
13610049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 31245626 - 31245995
Alignment:
| Q |
1 |
gagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggcttagttatgatggactaaagga |
100 |
Q |
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| T |
31245626 |
gagatgtctctgaatggagaagtgcattggcaaggttaagagaaaacccaaggacagatattatggatgtacttcgaattagttttgatggactagagga |
31245725 |
T |
|
| Q |
101 |
tatagaaaaggagatttttctggatattgcttgtttctttgatgnnnnnnnnnnnncatacgtgaagaaagttttagattttcgtggatttcatcccgaa |
200 |
Q |
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|| ||||||||| || ||| | |||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
31245726 |
tacagaaaaggatatatttttagatattgcttgtttcttttataaaaaatcggagacatacgtgaataaagttttagattttcgtggatttcatcctgaa |
31245825 |
T |
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| Q |
201 |
attggcttaagagttctctttgataaatcattaataacctatggga--ggttttctacgatttctatgcatcgtttgttaaaagaacttggcaggagtat |
298 |
Q |
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| T |
31245826 |
attggtttaagagttcttgttgataagtcattcataacctgtgagaacggg-----agaatttttatgcatgatttgttcaaagaactaggcaagagtat |
31245920 |
T |
|
| Q |
299 |
cattaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggaccacaaggatgtccacaatgttat |
373 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
31245921 |
cgttagggaaaaatcacccaaagaaccaagaaagtggaacaggatgtgggactacaaggatgtccacaatgttat |
31245995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 31477688 - 31477747
Alignment:
| Q |
171 |
gttttagattttcgtggatttcatcccgaaattggcttaagagttctctttgataaatca |
230 |
Q |
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|||||| ||| | ||||||||||| |||| ||||| |||||||||||| ||||||||||| |
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| T |
31477688 |
gttttaaattgttgtggatttcatgccgatattggattaagagttctcattgataaatca |
31477747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 14724899 - 14725022
Alignment:
| Q |
16 |
ggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggcttagttatgatggactaaaggatatagaaaaggagat |
115 |
Q |
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||||||||| |||||| ||||||||||||||||| | |||||| |||||||||||||| || |||||| ||| ||||||||||||| ||||||||| || |
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| T |
14724899 |
ggagaagtgtattggcaagattaagagagaatccaagggcagatattatggatgtacttcgaattagttttgaaggactaaaggatacagaaaaggatat |
14724998 |
T |
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| Q |
116 |
ttttctggatattgcttgtttctt |
139 |
Q |
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||||| ||||||||||||||||| |
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| T |
14724999 |
atttctagatattgcttgtttctt |
14725022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 17598863 - 17598740
Alignment:
| Q |
16 |
ggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggcttagttatgatggactaaaggatatagaaaaggagat |
115 |
Q |
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||||||||| |||||| ||||||||||||||||| | |||||| |||||||||||||| |||||| ||| ||||||||||||| ||||||||| || |
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| T |
17598863 |
ggagaagtgtattggcaagattaagagagaatccaagggcagatattatggatgtacttttaattagttttgaaggactaaaggatacagaaaaggatat |
17598764 |
T |
|
| Q |
116 |
ttttctggatattgcttgtttctt |
139 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
17598763 |
atttctagatattgcttgtttctt |
17598740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 373
Target Start/End: Complemental strand, 6472597 - 6472482
Alignment:
| Q |
258 |
atttctatgcatcgtttgttaaaagaacttggcaggagtatcattaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggaccacaagg |
357 |
Q |
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|||| ||||||| |||||| ||||||||||| | ||| ||| ||| |||||||||| ||||||||||||||||||||| ||||||||||| |||| | |
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| T |
6472597 |
atttgtatgcatgatttgttcaaagaacttgggaagagcatcgttagagaaaaatcaatgaaagaaccaagaaagtggaactggttgtgggactacaaag |
6472498 |
T |
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| Q |
358 |
atgtccacaatgttat |
373 |
Q |
| |
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|||| ||||||||||| |
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| T |
6472497 |
atgttcacaatgttat |
6472482 |
T |
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