View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_36 (Length: 364)
Name: NF14819_low_36
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 6249705 - 6250040
Alignment:
| Q |
13 |
agcaaaggttacgtttttgtggaatatttcagtacctcaatctatttggaattgtgataggatacacaattgcggcttctattagcatgacgtgatttca |
112 |
Q |
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| T |
6249705 |
agcaaaggttacgtttt-gtggaatatttcagtacctcaatctatttggaattgtgataggatacacaattgcggcttctattagcatgacgtgagttca |
6249803 |
T |
|
| Q |
113 |
cannnnnnnnatactttatacaagtaatttttaacaacataaacatgtttaggtctttttagggaagtacacattctaataatagtgttacatcttgtgc |
212 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249804 |
cattttttt-atactttatacaagtaatttttaacaacataaacatgtttaggtctttttagggaagtacacattctaataatagtgttacatcttgtgc |
6249902 |
T |
|
| Q |
213 |
gtttatttatatcattatatattttggtttgttcacaagnnnnnnnnnnntattacatacaatctcaaattaatatgtggtatgataggaaattggttta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249903 |
gtttatttatatcattatatattttggtttgttcacaagaaaaacaataatattacatacaatctcaaattaatatgtggtatgataggaaattggttta |
6250002 |
T |
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| Q |
313 |
acttcagtttcattggttgtttggttaacagggctatc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6250003 |
acttcagtttcattggttgtttggttaacagggctatc |
6250040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 39428909 - 39428824
Alignment:
| Q |
27 |
ttttgtggaatatttcagtacctcaatctatttggaattgtgataggatacacaattgcggcttctattagcatgacgtgatttca |
112 |
Q |
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|||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
39428909 |
ttttgtgggatattccagtacctaaatctatttggaattgttataggatacacaattgcggcatctattagcatgacgtgagttca |
39428824 |
T |
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