View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14819_low_39 (Length: 352)
Name: NF14819_low_39
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 49100750 - 49101055
Alignment:
| Q |
28 |
cacagacgattaagtatgtgtttttatagattgtttcacattttcacgatgaaaaatttattctagagatgtaaaattaatttcaacatgttagcatgtg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49100750 |
cacagacgattaagtatgtgtttttatagattgtttcacattttcacgatgaaaaatttattctagagatgtaaaattaatttcaacatgttagcatgtg |
49100849 |
T |
|
| Q |
128 |
ttggaatagagtttattttgtcttgtgaattcactcttgactatgaactcttgcctccaactttattttttagcctaaaattaattgttcgatttacttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49100850 |
ttggaatagagtttattttgtcttgtgaattcactcttgactatggactcttgcctccaactttattttttagcctaaaattaattgttcgatttacttt |
49100949 |
T |
|
| Q |
228 |
tactaaatgtgtttaaccaaaaatctttttatatgaaatcaattttacataatcaatcatcaaaattaattctactgagaaccaaacacatattaaatat |
327 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49100950 |
tactaaatgtgtttaatcaaaaatctttttatataaaatcaattttacataatcaatcatcaaaattaattctactgagaaccaaacacatattaaatat |
49101049 |
T |
|
| Q |
328 |
actaaa |
333 |
Q |
| |
|
|||||| |
|
|
| T |
49101050 |
actaaa |
49101055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University