View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_41 (Length: 340)
Name: NF14819_low_41
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_41 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 4144330 - 4143991
Alignment:
| Q |
1 |
catagaggtaaagttgccttatttctatttcaaacttgaattgaagtaagaggagggtgtgtgaatgaatgttagaagagagggtaacaattattgctac |
100 |
Q |
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| T |
4144330 |
catagaggtaaagttgccttatttctatttcaaacttgaattgaagtaagaggagggtgtgtgaatgaatgttagaagagagggtaacaattattgttac |
4144231 |
T |
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| Q |
101 |
tttataataacatatattcttgcataaaccatgctagaacataattataatttagaatggatttatacaaattttgattattcnnnnnnnagcttgacaa |
200 |
Q |
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| T |
4144230 |
tttataataacatatattcttgcataaaccatgctagaacataattgtaatttagaatggatttatacaaattttgattattctttttttagcttgacaa |
4144131 |
T |
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| Q |
201 |
tatatattcttgttaacaattgacaaatgtattcaggaagtaagtcgtaaaacttgattaatagagaacaaaaccaaatgaaaatagatgagctcccagt |
300 |
Q |
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| T |
4144130 |
tatatattcttgttaacaattgacaaatgtattcaggaagtaagtctcaaaacttgattaatagagaacaaaaccaaatgaaaatagatgagctaccagt |
4144031 |
T |
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| Q |
301 |
gtatgagttcgcaaatcttgaagctgccacaaacaacttt |
340 |
Q |
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| T |
4144030 |
gtatgagttcgcaaagcttgaagctgccacaaacaacttt |
4143991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 335
Target Start/End: Complemental strand, 4121294 - 4121153
Alignment:
| Q |
194 |
ttgacaatatatattcttgttaacaattgacaaatgtattcaggaagtaagtcgtaaaacttgattaatagagaacaaaaccaaatgaaaatagatgagc |
293 |
Q |
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| T |
4121294 |
ttgacaatatatatccttcttaacaattgaaaaatccattcaggaagacaatctcgaaacatgactagtagagaacataaacaaatgaaattggatgagc |
4121195 |
T |
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| Q |
294 |
tcccagtgtatgagttcgcaaatcttgaagctgccacaaaca |
335 |
Q |
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| T |
4121194 |
taccactgtatgactttgaaaagcttgaaactgctacaaaca |
4121153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4152178 - 4152132
Alignment:
| Q |
1 |
catagaggtaaagttgccttatttctatttcaaacttgaattgaagt |
47 |
Q |
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| T |
4152178 |
cataaaggtaaagtttcctgatttctatttcaaacttgcattgaagt |
4152132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4133332 - 4133288
Alignment:
| Q |
1 |
catagaggtaaagttgccttatttctatttcaaacttgaattgaa |
45 |
Q |
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| T |
4133332 |
cataaaggtaaagtttcctgatttctagttcaaacttgaattgaa |
4133288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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