View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14819_low_43 (Length: 336)
Name: NF14819_low_43
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_43 |
 | |
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| [»] chr6 (15 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
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|
| [»] scaffold0024 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 2997298 - 2996980
Alignment:
| Q |
18 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2997298 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggagaagttcttg |
2997199 |
T |
|
| Q |
118 |
aaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactga |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997198 |
aaattccttcgttaattgttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactga |
2997099 |
T |
|
| Q |
218 |
ttatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997098 |
ttatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattct |
2996999 |
T |
|
| Q |
318 |
gtggctaacttgtttaatg |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2996998 |
gtggctaacttgtttaatg |
2996980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 2927313 - 2927631
Alignment:
| Q |
18 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttg |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2927313 |
ctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcgggaggagttcttg |
2927412 |
T |
|
| Q |
118 |
aaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactga |
217 |
Q |
| |
|
|||||||| |||| |||| ||||| ||| ||| ||||||| ||||||||||||||||||||||||| ||||||| || | | | |||||||||||| |
|
|
| T |
2927413 |
aaattcctcaattaaaagttcaggattcgactgaaactttattacggaatatggttgctttggagcagtgtcattaccctgatgattcatatattactga |
2927512 |
T |
|
| Q |
218 |
ttatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattct |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
2927513 |
ttatcgttctgttttggattaccttataaatactggtaaggatgtggatatacttgttcagagggaaatactggaaaatatgcttggagacggtgattct |
2927612 |
T |
|
| Q |
318 |
gtggctaacttgtttaatg |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2927613 |
gtggctaacttgtttaatg |
2927631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 336
Target Start/End: Complemental strand, 3003703 - 3003391
Alignment:
| Q |
24 |
agtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003703 |
agtgcaactgagttgttagaagctggagttagatttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaaattc |
3003604 |
T |
|
| Q |
124 |
cttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactgattatgt |
223 |
Q |
| |
|
|| ||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| || | | | ||||||||| |||||| |
|
|
| T |
3003603 |
ctcaattattagttgcggattcgaccgaaactttatttcggaatatggttgctttggagcagtgtcattaccctgatgattcatatattaccgattatcg |
3003504 |
T |
|
| Q |
224 |
ttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattctgtggct |
323 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3003503 |
ttctgttttggattaccttataaatactgctaaggatgtggatatacttgttcagagcgaaatactggaaaatatgcttggagacagtgattctgtggct |
3003404 |
T |
|
| Q |
324 |
aacttgtttaatg |
336 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3003403 |
aacttgtttaatg |
3003391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 2964662 - 2964980
Alignment:
| Q |
18 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttg |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2964662 |
ctacctagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcgggaggagttcttg |
2964761 |
T |
|
| Q |
118 |
aaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactga |
217 |
Q |
| |
|
|||||||| ||||||| | | ||| |||||||| | | |||||||||||||||||||||||||||| || |||| || | ||| |||||||||||| |
|
|
| T |
2964762 |
aaattcctcaattaatagctcacgatgggaccgaaattatgtttcggaatatggttgctttggagcagtgtcgttacccttatgagtcatatattactga |
2964861 |
T |
|
| Q |
218 |
ttatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattct |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
2964862 |
ctatgttgctgttttggattaccttataaatactggcaaggatgtggatatacttgttcagaacaaaatactggaaaatatgcttggagatagtgattct |
2964961 |
T |
|
| Q |
318 |
gtggctaacttgtttaatg |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2964962 |
gtggctaacttgtttaatg |
2964980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 2658916 - 2658595
Alignment:
| Q |
18 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcg------ggaggag |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
2658916 |
ctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtgtttacttgacttgaggttttcaaaatcaggaggag |
2658817 |
T |
|
| Q |
112 |
ttcttgaaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatat |
211 |
Q |
| |
|
|||||||||||||| |||| ||||| ||| |||| ||| ||| ||||| |||||||||||||||||||| | ||||||| || | ||| |||||| |
|
|
| T |
2658816 |
ttcttgaaattcctcaattaacggttgacgataggactgaaattttgtttcgaaatatggttgctttggagcaatgtcattacccttatgagtcatatat |
2658717 |
T |
|
| Q |
212 |
tactgattatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagt |
311 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
2658716 |
tactgattatgttgctgttttggattaccttataaatactggtaaggatgtggatatacttgttccaaacaaaatactggaaaattggcttggagacagt |
2658617 |
T |
|
| Q |
312 |
gattctgtggctaacttgttta |
333 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2658616 |
gattctgtggctaacttgttta |
2658595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 2937613 - 2937931
Alignment:
| Q |
18 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttg |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
2937613 |
ctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaattgtttacttgacttgagattttcaggaggagttcttg |
2937712 |
T |
|
| Q |
118 |
aaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactga |
217 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||| ||| ||| |||||||||||||||||||||||| ||||||| || | ||| ||||||| |||| |
|
|
| T |
2937713 |
aaattcctcaattaacagttgaggattcgaccgaaattttgttttggaatatggttgctttggagcagtgtcattaccctcatgagtcatatattgctga |
2937812 |
T |
|
| Q |
218 |
ttatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattct |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||||||||| | |||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2937813 |
ttatgttgttgttttggattaccttataaataccggtaaggatgcgggtatacttgtttggaacaaaatactggaaaattggcttggagacagtgattct |
2937912 |
T |
|
| Q |
318 |
gtggctaacttgtttaatg |
336 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
2937913 |
gtggctaatttgtttaatg |
2937931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 24 - 336
Target Start/End: Original strand, 2929468 - 2929780
Alignment:
| Q |
24 |
agtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2929468 |
agtgcaactgagttgttagaagctggagttaggtttaaagtgaacactaaaagtaagtgtttacttgacttaaggttttcaggaggagttcttgaaattc |
2929567 |
T |
|
| Q |
124 |
cttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactgattatgt |
223 |
Q |
| |
|
|| |||| ||||| ||| |||||||| |||||||| |||||||| ||||||||||||||||||||||| || | ||| ||||||| ||||||||| |
|
|
| T |
2929568 |
ctcaattaacagttgcagatgggaccgaaactttattttggaatatgattgctttggagcagtttcattaccctcatgagtcatatattcttgattatgt |
2929667 |
T |
|
| Q |
224 |
ttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattctgtggct |
323 |
Q |
| |
|
| || || |||||| |||||||| ||||||||||| | ||||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
2929668 |
tactattatggattttcttataaatactggtaaggacgccgatatacttattcagaaagaaatactggaaaattggtttggagacaatcattctgtggct |
2929767 |
T |
|
| Q |
324 |
aacttgtttaatg |
336 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
2929768 |
aacatgtttaatg |
2929780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 2974160 - 2974478
Alignment:
| Q |
18 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttg |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2974160 |
ctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactaaaagtgaatgtttacatgacttgaggttttcgggaggagttcttg |
2974259 |
T |
|
| Q |
118 |
aaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactga |
217 |
Q |
| |
|
|||||||| |||| |||| | ||| |||||||| ||| |||||||||||||||||||||||||||| ||||||| || | ||| |||||||| ||| |
|
|
| T |
2974260 |
aaattcctcaattaacagttcaagatgggaccgaaattttgtttcggaatatggttgctttggagcagtgtcattacccttatcagtcatatattattga |
2974359 |
T |
|
| Q |
218 |
ttatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattct |
317 |
Q |
| |
|
|||| || | ||||||||||||||||||| ||| ||| |||||| ||||||||||||| | | |||||| |||||||||||||||||||||||||| |
|
|
| T |
2974360 |
ttatcattttattttggattaccttataaatactagtacggatgtggatatacttgttcggagcaatatactgcaaaattggcttggagacagtgattct |
2974459 |
T |
|
| Q |
318 |
gtggctaacttgtttaatg |
336 |
Q |
| |
|
|| |||| ||| ||||||| |
|
|
| T |
2974460 |
gttgctatcttatttaatg |
2974478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 25 - 336
Target Start/End: Original strand, 2934759 - 2935070
Alignment:
| Q |
25 |
gtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcc |
124 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934759 |
gtgcaactgaattgttagaagctggagttaggtttaaagtgaatactaaaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcc |
2934858 |
T |
|
| Q |
125 |
ttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactgattatgtt |
224 |
Q |
| |
|
| |||| ||||| ||| |||| ||| || ||||| |||||||||||||||||||||| ||||||| || | | | |||||| |||||||||||| |
|
|
| T |
2934859 |
tcaattaacggttgacgataggactgaaatttcgtttcgaaatatggttgctttggagcagtgtcattaccctgatgattcatatatcactgattatgtt |
2934958 |
T |
|
| Q |
225 |
tctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattctgtggcta |
324 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||||||| | ||| ||||| || |||||||||||||||| |
|
|
| T |
2934959 |
gctgtcatggattaccttataaatactggtacggatgctgatatacttgttcggaacgaaatactgcataatatgcttgcggatagtgattctgtggcta |
2935058 |
T |
|
| Q |
325 |
acttgtttaatg |
336 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2935059 |
acttgtttaatg |
2935070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 2952086 - 2952407
Alignment:
| Q |
18 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttg |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2952086 |
ctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcggaaggagttcttg |
2952185 |
T |
|
| Q |
118 |
aaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactga |
217 |
Q |
| |
|
|||||||| |||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| || | ||| ||||||| |||| |
|
|
| T |
2952186 |
aaattcctcaattaaaagttcaggattcaaccgaaactttatttcggaatatggttgctttggagcagtgtcattaccctgaggagtcatatattgctga |
2952285 |
T |
|
| Q |
218 |
ttatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggaga---cagtgat |
314 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||| ||||| ||||||||||||| | || ||||| || ||| ||||||||| |||||| |
|
|
| T |
2952286 |
ttatgttgttgttttggattacattataaatactggtaccgatgtggatatacttgttcggagggatatactagataatatgcttggagaaagtagtgat |
2952385 |
T |
|
| Q |
315 |
tctgtggctaacttgtttaatg |
336 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
2952386 |
tctgtggctaacaggtttaatg |
2952407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 26 - 336
Target Start/End: Original strand, 2983024 - 2983337
Alignment:
| Q |
26 |
tgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
125 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2983024 |
tgcaactcagttggtagaagctggagttaggtttcaagtgaaaactaaaagtaagtgtttatatgacttgaggttttcgggaggagttcttgaaattcct |
2983123 |
T |
|
| Q |
126 |
tcgttaatagttgaggatcg---gaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactgattatg |
222 |
Q |
| |
|
||||||||| | ||||| ||||||| ||| |||||||||||| ||||||||||||| | ||||||| || | ||| ||||||| |||||||| |
|
|
| T |
2983124 |
caattaatagttcatgatcggacgaccgaaattttgtttcggaatatgattgctttggagcattgtcattaccctcatgagtcatatattcttgattatg |
2983223 |
T |
|
| Q |
223 |
tttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattctgtggc |
322 |
Q |
| |
|
|| ||||||||||||||||||||| | |||||||||||| ||| ||||| |||| || ||||||| ||||| | |||||||||| || | ||| |||| |
|
|
| T |
2983224 |
ttcttgttttggattaccttataaataatggtaaggatgtggatgtacttattcagaagcaaatactagaaaacttgcttggagacggtcaatctatggc |
2983323 |
T |
|
| Q |
323 |
taacttgtttaatg |
336 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
2983324 |
tatcttgtttaatg |
2983337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 2978408 - 2978550
Alignment:
| Q |
26 |
tgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
125 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2978408 |
tgcaactgaattgttagaagctgga-ttaggtttaaagtgaacactaaaagtgagtgtttacttgatttgaggttttcgggaggagttcttgaaattcct |
2978506 |
T |
|
| Q |
126 |
tcgttaatagttgaggatcggaccgaagctttatttcggaatat |
169 |
Q |
| |
|
|||| |||||||||| |||||||| ||| |||||| |||| |
|
|
| T |
2978507 |
caattaagagttgaggatgggaccgaaattttgtttcggtatat |
2978550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 336
Target Start/End: Original strand, 2979192 - 2979359
Alignment:
| Q |
166 |
atatggttgctttggagcagtttcattacactaacaagttatatattactgattatgtttctgttttggattaccttataaacactggtaaggatgttga |
265 |
Q |
| |
|
||||||||||||||||||||| | ||||| || | ||| ||||||||||||||||||| || || |||||||||||||| || |||| |||||| || |
|
|
| T |
2979192 |
atatggttgctttggagcagtgttattaccctcatgagtcatatattactgattatgtt---gtcttcgattaccttataaataccggtacggatgtgga |
2979288 |
T |
|
| Q |
266 |
tatacttgttcacaaagaaatactggaaaattggcttggagacagtgattctgtggctaacttgtttaatg |
336 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
2979289 |
tatacttgttcggagcaaaatactggaaaatttgcttggagacagtcattctgctgctaaattgtttaatg |
2979359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 2985693 - 2985771
Alignment:
| Q |
230 |
tttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagac |
308 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||||||||||||| || ||||||||||||||||| || ||||| |
|
|
| T |
2985693 |
tttggattaccttataaatactagtaaggatgcggatatacttgttcagaaccaaatactggaaaattggtttcgagac |
2985771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 2954546 - 2954627
Alignment:
| Q |
70 |
ctaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattccttcgttaatagttgaggatcggaccga |
151 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | ||||||||| ||||||| |||| |||||| |||| |||||| |
|
|
| T |
2954546 |
ctaaaagtgagtgtttacttgacttgaggttttcacaacgagttcttggaattcctcaattaagagttgatgatcagaccga |
2954627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 3339180 - 3339496
Alignment:
| Q |
20 |
accaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaa |
119 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3339180 |
accaagcgcaactgagttgttagaagcaggagttaggtttaaagtgaacactaaaagtgagtgtttacttggcttgaggttttcgggaggagttcttgaa |
3339279 |
T |
|
| Q |
120 |
attccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactgatt |
219 |
Q |
| |
|
|||||| |||| |||||| ||| |||||||| ||| |||||||||||||||||||||||||||| ||||||| || | ||| |||||||| ||||| |
|
|
| T |
3339280 |
attcctcaattaacagttgacgatgggaccgaaattttgtttcggaatatggttgctttggagcagtgtcattaccctgatgagtcatatattattgatt |
3339379 |
T |
|
| Q |
220 |
atgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattctgt |
319 |
Q |
| |
|
||||| || ||||||||| ||||||||| ||| ||| |||||| |||||||||||| | | |||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
3339380 |
atgttgcttttttggatttccttataaatactagtatggatgtggatatacttgttaagagcgaaatactagaaaattggcttgcagacagtgattctgt |
3339479 |
T |
|
| Q |
320 |
ggctaacttgtttaatg |
336 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
3339480 |
ggctaaattgtttaatg |
3339496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 35167 - 34850
Alignment:
| Q |
18 |
ctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttg |
117 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
35167 |
ctaccgagtgcaactcagttgttagaagctggagttaggtttcaagtgaagcctaaaagtgagtgtttacttgacttggggttttcggaaggagtgcttg |
35068 |
T |
|
| Q |
118 |
aaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactga |
217 |
Q |
| |
|
|||||||| ||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||| || | ||| |||||||||||| |
|
|
| T |
35067 |
aaattcctcgattagaagttgaggatgggaccgaaattttgtttcggaatatggttgctttggagcagtgtcattacccttatgagtcatatattactga |
34968 |
T |
|
| Q |
218 |
ttatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattct |
317 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
34967 |
ttatgttgttgttttggatttccttataaatactggtaaggatgcggatatacttgttcggaaagaaatactgactaatttgcttggagacagtgattct |
34868 |
T |
|
| Q |
318 |
gtggctaacttgtttaat |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34867 |
gtggctaacttgtttaat |
34850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 70 - 336
Target Start/End: Complemental strand, 44804 - 44538
Alignment:
| Q |
70 |
ctaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattccttcgttaatagttgaggatcggaccgaagctttatttcggaatat |
169 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| | | ||||||||||||||||| |||| || ||| |||| | ||| ||| ||| | ||||| |
|
|
| T |
44804 |
ctaaaagtgagtgtttacttgatttgaggttttcagaaagagttcttgaaattcctcaattaagagctgatgatcaacctgaaattttgttttgaaatat |
44705 |
T |
|
| Q |
170 |
ggttgctttggagcagtttcattacactaacaagttatatattactgattatgtttctgttttggattaccttataaacactggtaaggatgttgatata |
269 |
Q |
| |
|
||||||| ||||| ||| ||||||| |||| | | |||||||| | |||||||| || ||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
44704 |
ggttgctatggagtagtatcattaccctaatgaatcatatattattaattatgttgctattttggattaccttataaatactggtaaggatgcagatata |
44605 |
T |
|
| Q |
270 |
cttgttcacaaagaaatactggaaaattggcttggagacagtgattctgtggctaacttgtttaatg |
336 |
Q |
| |
|
| ||||| | ||||||||||||||| ||||||||||||| ||| ||||||||| |||||||||| |
|
|
| T |
44604 |
catgttcggagcaaaatactggaaaatttgcttggagacagtcattatgtggctaatttgtttaatg |
44538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 45168 - 45120
Alignment:
| Q |
26 |
tgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaa |
74 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
45168 |
tgcaaatgagttgttagaagctggagttaggtttcaagtgaccactaaa |
45120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 24 - 335
Target Start/End: Original strand, 49613595 - 49613906
Alignment:
| Q |
24 |
agtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattc |
123 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||||||||||| |
|
|
| T |
49613595 |
agtgcaactgagttgttagaagctggggtgaggtttaaagtgaacactaaaagtgagtgtttacttgatttgaggttttcaggacgggttcttgaaattc |
49613694 |
T |
|
| Q |
124 |
cttcgttaatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactgattatgt |
223 |
Q |
| |
|
|| || | |||||||||| |||| ||| ||| |||||||||||||||||||||||||| | ||| ||| ||| ||| || ||||| |||||||| |
|
|
| T |
49613695 |
ctcaattgaaagttgaggattggactgaaattttgtttcggaatatggttgctttggagcaatgtcactaccctagtgagtcctacattacggattatgt |
49613794 |
T |
|
| Q |
224 |
ttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattctgtggct |
323 |
Q |
| |
|
| |||||||||||| |||||| || ||||| |||||||| |||||||||||||| || ||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
49613795 |
tgctgttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggatagtgattctgtggct |
49613894 |
T |
|
| Q |
324 |
aacttgtttaat |
335 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49613895 |
aacttgtttaat |
49613906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 30 - 336
Target Start/End: Original strand, 49618589 - 49618883
Alignment:
| Q |
30 |
actgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgaggttttcgggaggagttcttgaaattccttcgt |
129 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||| | |
|
|
| T |
49618589 |
actgagttgttagaagctggagttaggtttaaagtgaacactaaaactacatgtttacttgacttgaggttttccggacgagttcttgaaattcctcaat |
49618688 |
T |
|
| Q |
130 |
taatagttgaggatcggaccgaagctttatttcggaatatggttgctttggagcagtttcattacactaacaagttatatattactgattatgtttctgt |
229 |
Q |
| |
|
||| ||||||||| ||||||| | |||||||| ||||||||||||| |||||||| || | | | |||||| ||||||| ||||||| |
|
|
| T |
49618689 |
taagagttgaggaccggaccgtaactttattt-ggaatatggttgc-----------ttcattaccctcatgattcctatatttatgattatatttctgt |
49618776 |
T |
|
| Q |
230 |
tttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttggagacagtgattctgtggctaacttg |
329 |
Q |
| |
|
|||||||||||||||||| | |||| ||||| |||||||||||||| | || ||||| ||| ||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
49618777 |
tttggattaccttataaatatcggtagggatgcggatatacttgttcagagaggaatacaggataatatgcttgcagacagtgattctgtggcaaacttg |
49618876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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