View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_45 (Length: 331)
Name: NF14819_low_45
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 4314597 - 4314914
Alignment:
| Q |
1 |
ataagacattccttattcatatctttccaagcatcaacaactctttttcgaccttcttgaatggcaccttctctagagatattatgttgcttcatatagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314597 |
ataagacattccttattcatatctttccaagcatcaacaattctttttcgaccttcttgaatggcaccttctctagagatattatgttgcttcatatagc |
4314696 |
T |
|
| Q |
101 |
attccaagaatgaggaaacatgatctcttttttgttcaaactatatgcaacaaaaaatatataattcatgttacattgttgaattaaaacaaatatacat |
200 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314697 |
attccaagaatgaagaaacatgatctcttttttattcaaactatatgcaacaaataatatataattcatgttacattgttgaattaaaacaaatatacat |
4314796 |
T |
|
| Q |
201 |
tgtagacaaaattatggagaactttatcttcatacctcgttggacacaatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcc |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
4314797 |
tgcagacaaaattatggagaactttatcttcatacctcgttggatgcaatatcatccattagcctgcaaaggataatagcagcattgatcatttttattc |
4314896 |
T |
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| Q |
301 |
catatgatacccacttga |
318 |
Q |
| |
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||| |||||||||||||| |
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| T |
4314897 |
catttgatacccacttga |
4314914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 25794325 - 25794182
Alignment:
| Q |
1 |
ataagacattccttattcatatctttccaagcatcaacaactctttttcgaccttcttgaatggcaccttctctagagatattatgttgcttcatatagc |
100 |
Q |
| |
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||||||||||| | ||| ||||||||||||||||||| || ||| ||||| ||||||||||||||| |||| ||||| | || || || |||||||| | |
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| T |
25794325 |
ataagacattcttcatttatatctttccaagcatcaagaattctctttcggccttcttgaatggcagcttccctagacacatcatattctttcatataac |
25794226 |
T |
|
| Q |
101 |
attccaagaatgaggaaacatgatctcttttttgttcaaactat |
144 |
Q |
| |
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| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
25794225 |
actccaggaatgaggaaacatgttctcttttttgttcaaactat |
25794182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 25794093 - 25794000
Alignment:
| Q |
232 |
atacctcgttggacacaatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcccatatgatacccacttgatgatgtc |
325 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||| | || || |||||| | ||||||||| ||| ||||| |||||||| |||||| |
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| T |
25794093 |
atacctcattggacacaatgtcatccattagcctgcaaagtacaacagaagcattaagaatttttggctcatttgatatccacttgaagatgtc |
25794000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 326
Target Start/End: Complemental strand, 31201637 - 31201315
Alignment:
| Q |
6 |
acattccttattcatatctttccaagcatcaacaactctttttcgaccttcttgaatggcaccttctctagagatattatgttgcttcatatagcattcc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||| ||||||| ||||| |||| |||||||||||||| |
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| T |
31201637 |
acattccttattcatatctttccaagcatcagcaattctatttcgaccttcttgaatggcagcttccctagagacattatattgcctcatatagcattcc |
31201538 |
T |
|
| Q |
106 |
aagaatgaggaaacatgatctcttttttgttcaaact--atatgcaacaaaaaata--tataattcatg-ttacattgttgaattaaaacaaatatacat |
200 |
Q |
| |
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|||||||||| |||||| ||||||| ||||||||||| |||| ||||||| |||| | | | ||| |||||||||| ||||||||||||||| || |
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| T |
31201537 |
aagaatgaggtaacatgttctctttcttgttcaaactatatatccaacaaataatagttttggtaaatgtttacattgtt-aattaaaacaaatat--at |
31201441 |
T |
|
| Q |
201 |
tgtagacaaaattatggagaactttatcttcatacctcgttggacacaatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcc |
300 |
Q |
| |
|
|||||| |||||||| ||| ||||| | |||||| ||||||||||| |||||||||| ||| | ||||||||| |||||||| || | |||||| |
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| T |
31201440 |
tgtagagaaaattatttggaattttatatatgtacctcattggacacaatgtcatccattaaccttccaatgataattgcagcattaataacttttggat |
31201341 |
T |
|
| Q |
301 |
catatgatacccacttgatgatgtcc |
326 |
Q |
| |
|
||| |||||||||||||| ||||||| |
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|
| T |
31201340 |
catttgatacccacttgaagatgtcc |
31201315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41349419 - 41349568
Alignment:
| Q |
1 |
ataagacattccttattcatatctttccaagcatcaacaactctttttcgaccttcttgaatggcaccttctctagagatattatgttgcttcatatagc |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| |
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| T |
41349419 |
ataagacattctttattaatatctttccaagcatctacaattctctttcgaccttcttgaatggcaacttctctagagatattatattgcctcatatagc |
41349518 |
T |
|
| Q |
101 |
attccaagaatgaggaaacatgatctcttttttgttcaaactatatgcaa |
150 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41349519 |
attccaagaatgaggaaacatgttctcttttttgttcaaactatatgcaa |
41349568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 31161915 - 31161766
Alignment:
| Q |
2 |
taagacattccttattcatatctttccaagcatcaacaactctttttcgaccttcttgaatggcaccttctctagagatattatgttgcttcatatagca |
101 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| || ||| |||||||||||| | | |||| ||||||| ||||| | |||||| ||||| |
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| T |
31161915 |
taagacattgcttattcatatctttccaagcattggcaatcctcttttgaccttcttgaactgaagcttccctagagacattatacttcttcatgtagca |
31161816 |
T |
|
| Q |
102 |
ttccaagaatgaggaaacatgatctcttttttgttcaaactatatgcaac |
151 |
Q |
| |
|
||||||||||||||| | ||| |||||||| |||||||||||||| |||| |
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|
| T |
31161815 |
ttccaagaatgaggacatatgttctcttttctgttcaaactatatacaac |
31161766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 41349663 - 41349749
Alignment:
| Q |
232 |
atacctcgttggacacaatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcccatatgatacccacttga |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| || |||||||||||| || ||||||| | ||| ||||||||| |||| |
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|
| T |
41349663 |
atacctcgttggatacaatatcatccattatcctgcaaaggacaatagcagcattaataatttttgactcatttgatacccatttga |
41349749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 31161614 - 31161515
Alignment:
| Q |
223 |
tttatcttcatacctcgttggacacaatatcatccattagcctgcaaatgataatagcagcattgatcatttttggcccatatgatacccacttgatgat |
322 |
Q |
| |
|
||||| || ||||||| ||||| |||| |||||||||| ||||| ||| | |||||||||||| | ||||||| ||| |||||||||||||||||| |
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|
| T |
31161614 |
tttatatttatacctcattggatgcaatgtcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttgatgat |
31161515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 17183238 - 17183098
Alignment:
| Q |
2 |
taagacattccttattcatatctttccaagcatcaacaactctttttcgaccttcttgaatggcaccttctctagagatattatgttgcttcatatagca |
101 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||| ||||||||||||| | | ||||||||| | | |||||||||| ||||| | || |||||||||||| |
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|
| T |
17183238 |
taagacattcttcatttatatctttccaagcattaacaactcttttttggcattcttgaatagaagcttctctagatatattgtattccttcatatagca |
17183139 |
T |
|
| Q |
102 |
ttccaagaatgaggaaacatgatctcttttttgttcaaact |
142 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
17183138 |
ttccaagaatgaggaaacatgtcctcttttatgttcaaact |
17183098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 20603030 - 20603118
Alignment:
| Q |
54 |
ttcttgaatggcaccttctctagagatattatgttgcttcatatagcattccaagaatgaggaaacatgatctcttttttgttcaaact |
142 |
Q |
| |
|
||||||||| ||| |||||||||| |||| | |||||||||||| || || || |||||| ||||||| ||||||| |||||||||| |
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|
| T |
20603030 |
ttcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatgagcaaacatgtcctcttttctgttcaaact |
20603118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 20622198 - 20622236
Alignment:
| Q |
232 |
atacctcgttggacacaatatcatccattagcctgcaaa |
270 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
20622198 |
atacctcgttggaaacaatttcatccattagcctgcaaa |
20622236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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