View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_low_50 (Length: 317)

Name: NF14819_low_50
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_low_50
NF14819_low_50
[»] chr1 (1 HSPs)
chr1 (11-300)||(17517250-17517539)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 17517250 - 17517539
Alignment:
Q  11 aagaatatggtttatatgaatccaatagatttaagcacaagttgtaatatattttcatacattatataggataggataggagtgtgagtgtcttgttttc 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  17517250 aagaaaatggtttatatgaatccaatagatttaagcacaagttgcaatacattttcatacattctatat-ataggataggagtgtgagtgtcttgttttc 17517348  T
Q  111 aaagagtgtactcttgaacaaaataaggtgagaacattgtggttcctttatattttgcactatgttctacttattataatcacattcatcattcatgtgt 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  17517349 aaagagtgcactcttgaacaaaataaggtgagaacattgtggttcctttatattttgcattatgttttacttattataatcacattcatcattcatgtgt 17517448  T
Q  211 tc-taacagtactttattcattacttcattgtttgagcataatttgtaagtgaaatttgggctcctttttcaatgttttatatttctgtca 300  Q
    || |||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17517449 tcttaacagtactttattcatcactttattgtttgagcatcatttgtaagtgaaatttgggctcctttttcaacgttttatatttctgtca 17517539  T

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