View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_51 (Length: 314)
Name: NF14819_low_51
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_51 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 507308 - 507015
Alignment:
| Q |
15 |
aggcaaaagaagttcgagttaagatgctatgttcaagtgtatgccacacagacatatcaagccttaaaggatttccacatgttagttccataatttcaat |
114 |
Q |
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| T |
507308 |
aggcaaaagaagttcgagttaagatgctatgttcaagtgtatgccacacagacatatcaagccttaaaggatttccacatgttagttccataatttcaat |
507209 |
T |
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| Q |
115 |
catatgctatatatgttttgagtttagagtttgctttttcccaataacaatagtctctatgcaaatattcagaannnnnnnnnnnnnnnnngtcaagtaa |
214 |
Q |
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| T |
507208 |
catatgc----tatgttttcagtttttagtttgctttttcccaataacaatagtgtctatgcaaatattcagaa-ttttttttttttttttgtcaagtaa |
507114 |
T |
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| Q |
215 |
tataatgcccataatttcacccatagttttgaaaaccagattaaaccgaccagttgaacgggtccgatcagaaaccagtggagtgaccggttcgaattgt |
314 |
Q |
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| T |
507113 |
tataatgcccataatttcacccatagttttgaaaaccggattagaccgaccagttgaatgcgtccgatcaggaa-ctgtggagtgaccggttcgaattgt |
507015 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 20052521 - 20052442
Alignment:
| Q |
18 |
caaaagaagttcgagttaagatgctatgttcaagtgtatgccacacagacatatcaagccttaaaggatttccacatgtt |
97 |
Q |
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| T |
20052521 |
caaaagaagttcgagttaagatgctttgtgctagtctctgccacacagatttctcaagcactcaaggatttccacatgtt |
20052442 |
T |
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