View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_52 (Length: 314)
Name: NF14819_low_52
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 35978283 - 35978576
Alignment:
| Q |
1 |
gaaatcagcagagatggatgattgttttataatagacaaatggaaccttgttgtggaattaagcataattttctgtattttcaaatcacgtttgnnnnnn |
100 |
Q |
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| T |
35978283 |
gaaatcagcagagatggatgattgtttcataatagacaaatggaaccttgttgtggacttaagcataattttatgtattttcaaatcacgtttgtttttt |
35978382 |
T |
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| Q |
101 |
ngtgtatttttcctttagtactactctgcctagcaatgactggaggataaggaaaacaatttgattataggaactactaggttacatcaaattcacaggt |
200 |
Q |
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| T |
35978383 |
-gtgtatttttcctttagtactactctgcctagcaatgactgaaggataaggaaaacaatttgattataggaactactaggttacatcaaattcacaggt |
35978481 |
T |
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| Q |
201 |
tacatgcaatttttctctaatatttatggttcatgacatcaatttataggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttgg |
295 |
Q |
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| T |
35978482 |
tacatacaatttttctctaatatttatggttcatgacatcaatatataggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttgg |
35978576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 294
Target Start/End: Original strand, 35951238 - 35951403
Alignment:
| Q |
125 |
tctgcctagcaatgactggaggataaggaaaacaatttgattataggaactactaggttacatcaaattcacaggttacatgcaatttttctctaatatt |
224 |
Q |
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| T |
35951238 |
tctgcctagcaatgact--aggacaaggaaaacaatatgattataggaaaaagtaggttacatcaacttcacaggttacatacaatgttactctaatgtt |
35951335 |
T |
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| Q |
225 |
tatggttcatga-catcaatttataggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttg |
294 |
Q |
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| T |
35951336 |
tgtggttcatgatcttca---tctaggcttttcaataccaacagatgaatatggttcaaaagagaaagttg |
35951403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 35968342 - 35968424
Alignment:
| Q |
105 |
tatttttcctttagtactactctgcctagcaatgactggaggataaggaaaacaatttgattataggaactactaggttacat |
187 |
Q |
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| T |
35968342 |
tattttccttttagtactattatgcctagcagtgacttaaggataaggaaaacaatatgaatataggaactattaggttacat |
35968424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 35971324 - 35971411
Alignment:
| Q |
149 |
aaggaaaacaatttgattataggaactactaggttacatcaaattcacaggttacatgcaatttttctctaatatttatggttcatga |
236 |
Q |
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| T |
35971324 |
aaggaaaacaatatgattatatgaagtagtaggttacatcaatttcacattttacatacaatttcactctaatgtgtgtggttcatga |
35971411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 35968455 - 35968502
Alignment:
| Q |
247 |
taggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttg |
294 |
Q |
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| T |
35968455 |
taggctcttcaataccaacaaatgaatatagttcagaagagaaagttg |
35968502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 35955820 - 35955914
Alignment:
| Q |
197 |
aggttacatgcaatttttctctaatatttatggttcatgacatcaatttataggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagtt |
293 |
Q |
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| T |
35955820 |
aggttacatacaattttactctaatgtttgtggttcatgatgtccattta--ggttcttcaaaaccaacaaatgagcatggttcaaaagaggaagtt |
35955914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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