View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_low_57 (Length: 306)

Name: NF14819_low_57
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_low_57
NF14819_low_57
[»] chr4 (8 HSPs)
chr4 (18-289)||(1547233-1547504)
chr4 (142-289)||(1552181-1552328)
chr4 (252-289)||(12124835-12124872)
chr4 (252-289)||(12126891-12126928)
chr4 (158-202)||(533101-533145)
chr4 (254-289)||(2367689-2367724)
chr4 (161-203)||(6007762-6007804)
chr4 (159-203)||(53759968-53760012)
[»] chr8 (2 HSPs)
chr8 (232-289)||(32152217-32152274)
chr8 (161-201)||(32152308-32152348)
[»] chr7 (5 HSPs)
chr7 (246-283)||(10168817-10168854)
chr7 (246-283)||(10176342-10176379)
chr7 (228-285)||(10615966-10616023)
chr7 (158-195)||(10616209-10616246)
chr7 (248-288)||(15091362-15091402)
[»] chr6 (7 HSPs)
chr6 (232-289)||(7993299-7993356)
chr6 (254-289)||(6437160-6437195)
chr6 (158-196)||(19633436-19633474)
chr6 (248-285)||(6417345-6417382)
chr6 (158-203)||(6417580-6417625)
chr6 (158-203)||(7993099-7993144)
chr6 (158-203)||(14821707-14821752)
[»] chr1 (1 HSPs)
chr1 (248-289)||(19467197-19467238)
[»] chr5 (2 HSPs)
chr5 (158-196)||(29022136-29022174)
chr5 (158-199)||(20477110-20477151)
[»] chr3 (4 HSPs)
chr3 (173-203)||(51763081-51763111)
chr3 (158-195)||(13469172-13469209)
chr3 (228-284)||(13469395-13469451)
chr3 (246-286)||(37579548-37579588)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 1547233 - 1547504
Alignment:
Q  18 cttggaataacaaccgacgttactgaaagttcaatccaacaccgacatcaacaatgaaaaggaagagaacaaactctctccaatcttcacaccaacaatc 117  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547233 cttggaataacaaccgacgtcactggaagttcaatccaacaccgacatcaacaatgaaaaggaagagaacaaactctctccaatcttcacaccaacaatc 1547332  T
Q  118 gctttcttcaaaaagaccaagaacagtcactgatagtttgtatttacctgacgagtgttgggaatctatcttcaaattcatcatcatctacggtgacaac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1547333 gctttcttcaaaaagaccaagaacagtcactgatagtttgtatttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggtgacaac 1547432  T
Q  218 atcaacaatcgtcgctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547433 atcaacaatcgtggctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 1547504  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 289
Target Start/End: Original strand, 1552181 - 1552328
Alignment:
Q  142 agtcactgatagtttgtatttacctgacgagtgttgggaatctatcttcaaattcatcatcatctacggtgacaacatcaacaatcgtcgctacttgaag 241  Q
    |||| ||||| |||| || |||||| | ||||||||||||| ||| |||||||| ||||||||||| || ||  |||||||||| | |||||| ||||||    
T  1552181 agtcgctgatggtttatacttacctcatgagtgttgggaatttattttcaaatttatcatcatctaaggcgatgacatcaacaaacttcgctatttgaag 1552280  T
Q  242 tcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    || |||||||| ||||||||||| |||| ||| |||||| ||||||||    
T  1552281 tctttatccctcgtctccaaacagttcccctctatcaccgaccgtctc 1552328  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 12124872 - 12124835
Alignment:
Q  252 ttgtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12124872 ttgtctccaaacaatttctctccatcaccaaccgtctc 12124835  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 12126928 - 12126891
Alignment:
Q  252 ttgtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12126928 ttgtctccaaacaatttctctccatcaccaaccgtctc 12126891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 533145 - 533101
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaattcatcatc 202  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||    
T  533145 tatttacccgacgagtgttgggaatctgtcttcaaattcgtcatc 533101  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 2367689 - 2367724
Alignment:
Q  254 gtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    |||||||||||||| |||||||||||||||||||||    
T  2367689 gtctccaaacaatttctctccatcaccaaccgtctc 2367724  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 6007804 - 6007762
Alignment:
Q  161 ttacctgacgagtgttgggaatctatcttcaaattcatcatca 203  Q
    |||||| |||| |||||||||||||||||||||||| ||||||    
T  6007804 ttacctaacgaatgttgggaatctatcttcaaattcctcatca 6007762  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 53759968 - 53760012
Alignment:
Q  159 atttacctgacgagtgttgggaatctatcttcaaattcatcatca 203  Q
    |||||||||| ||||| |||||||||||||||||| || ||||||    
T  53759968 atttacctgatgagtgctgggaatctatcttcaaactcgtcatca 53760012  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 32152274 - 32152217
Alignment:
Q  232 ctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    ||||||||| ||| | ||||| ||||||||||| |||||||||||||||||| |||||    
T  32152274 ctacttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctc 32152217  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 32152348 - 32152308
Alignment:
Q  161 ttacctgacgagtgttgggaatctatcttcaaattcatcat 201  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  32152348 ttacctgacgattgtttggaatctatcttcaaattcatcat 32152308  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 10168817 - 10168854
Alignment:
Q  246 tatcccttgtctccaaacaattcctctccatcaccaac 283  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10168817 tatcccttgtctccaaacagttcctctccatcaccaac 10168854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 10176342 - 10176379
Alignment:
Q  246 tatcccttgtctccaaacaattcctctccatcaccaac 283  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10176342 tatcccttgtctccaaacagttcctctccatcaccaac 10176379  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 10616023 - 10615966
Alignment:
Q  228 gtcgctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccg 285  Q
    ||||||||||||| ||  | |||||||||||||| ||| |||||||||||||||||||    
T  10616023 gtcgctacttgaattctctctcccttgtctccaagcaactcctctccatcaccaaccg 10615966  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaatt 195  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 15091362 - 15091402
Alignment:
Q  248 tcccttgtctccaaacaattcctctccatcaccaaccgtct 288  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  15091362 tccctcgtctccaaacagttcctctccatcaccaacagtct 15091402  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 7993299 - 7993356
Alignment:
Q  232 ctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    ||||||||| || ||||| || ||||||||||| |||||||||||||||| |||||||    
T  7993299 ctacttgaattctttatctctcgtctccaaacagttcctctccatcaccagccgtctc 7993356  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 6437195 - 6437160
Alignment:
Q  254 gtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctc 6437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 19633474 - 19633436
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaattc 196  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  19633474 tatttacctgatgagtgttgggaatctatcttcgaattc 19633436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 6417382 - 6417345
Alignment:
Q  248 tcccttgtctccaaacaattcctctccatcaccaaccg 285  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  6417382 tcccttgtctccaagcaactcctctccatcaccaaccg 6417345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 6417625 - 6417580
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaattcatcatca 203  Q
    |||||||| || ||||||||||||  ||||||||||||||||||||    
T  6417625 tatttacccgatgagtgttgggaacttatcttcaaattcatcatca 6417580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 7993099 - 7993144
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaattcatcatca 203  Q
    ||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  7993099 tatttacctgatgagtgttgggaaactattttcaacttcatcatca 7993144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 14821752 - 14821707
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaattcatcatca 203  Q
    |||||||| || || |||||||||||||||||||||||||| ||||    
T  14821752 tatttacccgatgattgttgggaatctatcttcaaattcattatca 14821707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 19467197 - 19467238
Alignment:
Q  248 tcccttgtctccaaacaattcctctccatcaccaaccgtctc 289  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  19467197 tcccttgtctccaaacaattcctctcaataaccaaccgtctc 19467238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 29022174 - 29022136
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaattc 196  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  29022174 tatttacctgacgagtgttgggaatgcatcttcaaattc 29022136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 20477110 - 20477151
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaattcatc 199  Q
    |||||||| ||||| |||||||||||||| ||||||||||||    
T  20477110 tatttacccgacgactgttgggaatctattttcaaattcatc 20477151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 203
Target Start/End: Original strand, 51763081 - 51763111
Alignment:
Q  173 tgttgggaatctatcttcaaattcatcatca 203  Q
    |||||||||||||||||||||||||||||||    
T  51763081 tgttgggaatctatcttcaaattcatcatca 51763111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 13469172 - 13469209
Alignment:
Q  158 tatttacctgacgagtgttgggaatctatcttcaaatt 195  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  13469172 tatttacctgacgagtgttgggaacgtatcttcaaatt 13469209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 13469395 - 13469451
Alignment:
Q  228 gtcgctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaacc 284  Q
    ||||||||||||| ||  | |||||||||||||| ||| ||||||| ||||||||||    
T  13469395 gtcgctacttgaattctctctcccttgtctccaagcaactcctctctatcaccaacc 13469451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 37579548 - 37579588
Alignment:
Q  246 tatcccttgtctccaaacaattcctctccatcaccaaccgt 286  Q
    |||||||||| |||||||| |||||||||||||| ||||||    
T  37579548 tatcccttgtttccaaacagttcctctccatcacaaaccgt 37579588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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