View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_59 (Length: 297)
Name: NF14819_low_59
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 34723580 - 34723312
Alignment:
| Q |
12 |
gagaagaagaaacctgcttcattttgtctttcctgcgtccacctgtccactgtctctctggcctatgctactctgctcaatccaaatggttgatagttga |
111 |
Q |
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| T |
34723580 |
gagaagaagaaacctgcttcattttgtctttcctgcgtccacctgtccactgtctctctggcct--------ctgctcaatccaaatggttgaaagttga |
34723489 |
T |
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| Q |
112 |
aacactttttt-ccattcaaacaa----ctacgttgtttgtcgtttttgcgtccacctgtcactgttccacacttccactctctctctgtttattctaaa |
206 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34723488 |
aacactttttttccattcaaacaaacaactacgttgtttgtcgtttttgcgtccacctgtcactgttccacacttccactctctctctgtttattctaaa |
34723389 |
T |
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| Q |
207 |
tggattgaaagttgaaacac-nnnnnnnccattccattgcctcactctacacactttcattccagtacatttctgtt |
282 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34723388 |
tggattgaaagttgaaacactttttttcccattccattgcctcactctacacactttcattccagtacgtttctgtt |
34723312 |
T |
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