View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_6 (Length: 583)
Name: NF14819_low_6
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Original strand, 27921847 - 27922405
Alignment:
| Q |
16 |
cagtaactacataaccaccgacgttaatttgttaaattttgtatcttgtgggttgatgctcgttttgtgcagaaatttagttattaataaatcttatcgt |
115 |
Q |
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| T |
27921847 |
cagtaactacataaccaccgacgttaatttgttaaattttgtatcttgtgggttgatgctcgttttgtgcagaaatttagttattaataaatcttatcat |
27921946 |
T |
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| Q |
116 |
ttgnnnnnnntaat-aatcagttgcannnnnnncaacaattttacaaactttaattaaagacaaaatagtaacaaattaaacattttccatcaataagta |
214 |
Q |
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| T |
27921947 |
ttaaaaataataattaattagttgcatttttttcaacaattttacgaactttaattaaagacaaaata---acaaattaaacttttttcgtcaataagta |
27922043 |
T |
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| Q |
215 |
aataaatacaaaacagcgttaactaagttataattcttaacnnnnnnnntaa----ttgtcctcttgattatccatatgagcatatattgttcatttcat |
310 |
Q |
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| T |
27922044 |
aataaatacaaaacagcgttaactaagttataattcttaaaaaaaaaataaaaaaattgtcctcttgataatccatatgagcatatattgttcatttcat |
27922143 |
T |
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| Q |
311 |
tttgtttgataccttaatgaaatagtcccttctttttggaaaaaaca--gaaggaaatagtctctgctttcgtaatatagtttttattccacaacttgtt |
408 |
Q |
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| T |
27922144 |
tttgtttgataccttaatgaaatagtccctgctttttggaaaaaacaaagaaggaaatagtctgtgctttcgtaatatagtttttattccacaacttgtt |
27922243 |
T |
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| Q |
409 |
tatttattttggtatgttgagtattattaacaataggattcggttatgtttggttatgaagagacgcacatatagacagcgataaaatttaaggtataaa |
508 |
Q |
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| T |
27922244 |
tatttattttggtatgttgagtattattaacaataggattcggttgtgtttggttatgaagagacacacatatagacagcgataaaatttaaggtataat |
27922343 |
T |
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| Q |
509 |
tagaatttaccagcaagctagagcttggtgcattcacccgaactttcaacattgtgattcat |
570 |
Q |
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| T |
27922344 |
tagaatttactagcaagctagagcttggtgcattcacccgaactttcaacattgtgattcat |
27922405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 486
Target Start/End: Original strand, 27915521 - 27915604
Alignment:
| Q |
407 |
tttatttattttggtatgttgagtattat-----taacaataggattcggttatgtttggttatgaagagacgcacatatagaca |
486 |
Q |
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| T |
27915521 |
tttatttattttggtatgttgaatattatattattaacaagaggct-cggttatgtttggttatgaagagacacacatagagaca |
27915604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 27915452 - 27915492
Alignment:
| Q |
306 |
ttcattttgtttgataccttaatgaaatagtcccttctttt |
346 |
Q |
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| T |
27915452 |
ttcattttgtttgataccttagtgaaaaagtccctgctttt |
27915492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 13897258 - 13897217
Alignment:
| Q |
75 |
tcgttttgtgcagaaatttagttattaataaatcttatcgtt |
116 |
Q |
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| T |
13897258 |
tcgtcttgtgcagatatttagttattaataaattttatcgtt |
13897217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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