View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_low_62 (Length: 291)

Name: NF14819_low_62
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_low_62
NF14819_low_62
[»] chr1 (6 HSPs)
chr1 (20-281)||(246756-247017)
chr1 (24-252)||(235106-235334)
chr1 (20-251)||(8814358-8814589)
chr1 (86-256)||(231530-231706)
chr1 (42-253)||(251388-251596)
chr1 (100-155)||(4439829-4439884)
[»] chr6 (7 HSPs)
chr6 (105-257)||(7025724-7025882)
chr6 (105-255)||(7041470-7041620)
chr6 (101-241)||(7046809-7046949)
chr6 (165-256)||(7029847-7029938)
chr6 (165-255)||(9170851-9170941)
chr6 (105-255)||(7012788-7012944)
chr6 (105-255)||(9159487-9159643)
[»] chr3 (16 HSPs)
chr3 (105-222)||(41985602-41985719)
chr3 (100-221)||(9617489-9617610)
chr3 (124-253)||(9448307-9448436)
chr3 (109-253)||(9343823-9343967)
chr3 (100-156)||(9425542-9425598)
chr3 (108-156)||(9397762-9397810)
chr3 (108-156)||(9407343-9407391)
chr3 (100-155)||(9494900-9494955)
chr3 (170-255)||(9395298-9395383)
chr3 (168-221)||(41980891-41980944)
chr3 (100-155)||(9352870-9352925)
chr3 (100-151)||(9377055-9377106)
chr3 (112-222)||(9655382-9655492)
chr3 (87-155)||(9402335-9402403)
chr3 (87-155)||(9420574-9420642)
chr3 (112-156)||(9626571-9626615)
[»] chr2 (1 HSPs)
chr2 (100-155)||(20694393-20694448)
[»] chr5 (1 HSPs)
chr5 (91-147)||(18571068-18571124)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 246756 - 247017
Alignment:
Q  20 aatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattccc 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  246756 aatcggacaaaggtaaaagtcgaccatcatcccagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattccc 246855  T
Q  120 tttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttc 219  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  246856 tttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttc 246955  T
Q  220 tcccttgcattaagcttaaacacgtcaatccttacacatccgcgatcatcatcaaacctatg 281  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  246956 tcccttgcattaagcttaaacaagtcaatccttacacatccgcgatcatcatcaaacctatg 247017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 235106 - 235334
Alignment:
Q  24 ggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattccctttg 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||    
T  235106 ggacaaaggtaaaagttgaccatcatccaagtccaaaaaagagctcttatactgcacacgagtgaagatattatccataatgatgactaaattccctttg 235205  T
Q  124 ggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctccc 223  Q
    ||||||||||||||| ||||||||||||||||  | || | |||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||     
T  235206 ggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctcct 235305  T
Q  224 ttgcattaagcttaaacacgtcaatcctt 252  Q
    || |||||||||||||||||| |||||||    
T  235306 tttcattaagcttaaacacgttaatcctt 235334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 8814589 - 8814358
Alignment:
Q  20 aatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattccc 119  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||| ||| | || |  |  ||| ||||||||||| |||||||||||| |||||||||||    
T  8814589 aatcgaacaaaggcaaaggtcgaccatcatccaagtccaaaaaatagcccatagaaggatcacaagtgaagatatcatccataatgatcacacaattccc 8814490  T
Q  120 tttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttc 219  Q
    ||||||||||||||||||||||||||||||||||||| | || ||  ||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||    
T  8814489 tttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttc 8814390  T
Q  220 tcccttgcattaagcttaaacacgtcaatcct 251  Q
    ||| || | ||||||||||||| |||||||||    
T  8814389 tccttttcgttaagcttaaacatgtcaatcct 8814358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 86 - 256
Target Start/End: Original strand, 231530 - 231706
Alignment:
Q  86 tgaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaa------aattaccagaacaaccccaagaacaa 179  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||      ||| | || |   |||||||||||||    
T  231530 tgaaaatattatccataatgatgacacaattcccttttggaacacataaatccaaagcagaagcagaagcagaaaatgaacatagggaccccaagaacaa 231629  T
Q  180 aactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacac 256  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||| || ||||||||||    
T  231630 aactatatcccctaaattagccaacttcacccacttcatctcctttgcattgagcttaaacacatctatccttacac 231706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 42 - 253
Target Start/End: Complemental strand, 251596 - 251388
Alignment:
Q  42 accatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaa 141  Q
    ||||||||||||||||||||||||| |||||||   |   ||| |||||||||||||||||||||| |||||||||| |||  |||||||||||||| |     
T  251596 accatcatccaagtccaaaaaagaggtcttacaatac---cgattgaagatattatccataatgatcacacaattccgtttccgaacacacaaatccgat 251500  T
Q  142 gcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaaca 241  Q
    |||||| |||||||| | || | | ||||||||||||||||| ||||||||| ||| |||||||| ||||| ||||| ||| || |||||||||||||||    
T  251499 gcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcattaagcttaaaca 251400  T
Q  242 cgtcaatcctta 253  Q
    ||| ||||||||    
T  251399 cgttaatcctta 251388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 4439829 - 4439884
Alignment:
Q  100 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 155  Q
    |||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  4439829 ataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaa 4439884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 257
Target Start/End: Original strand, 7025724 - 7025882
Alignment:
Q  105 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaac------cccaagaacaaaactatatcccctaaatta 198  Q
    ||||||| |||||||||||| ||||||||||||  ||||| ||||||||||  | || | ||||      ||||||||||||||  |||| |||||| |     
T  7025724 gatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaaactc 7025823  T
Q  199 gccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacaca 257  Q
    | |||||||||||| ||||||||| |  |||||||||||||||  ||||||||||||||    
T  7025824 gtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacaca 7025882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 7041470 - 7041620
Alignment:
Q  105 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaac 204  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| |||| ||  | || |     ||||||||||||||  ||||||||||| ||| ||||    
T  7041470 gatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaac 7041569  T
Q  205 ttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 255  Q
    |||||||| ||||||||| |  ||||||| |||||||  ||||||| ||||    
T  7041570 ttcacccacttcttctccttctcattaagtttaaacaaatcaatccataca 7041620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 7046809 - 7046949
Alignment:
Q  101 taatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagc 200  Q
    ||||||| |||||||||||||||| |||| |||||||  ||  ||||||||||||  | ||    | |||||||||||||||| ||||||||||| | |     
T  7046809 taatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgt 7046908  T
Q  201 caacttcacccatttcttctcccttgcattaagcttaaaca 241  Q
     ||||||||||| ||||||||| |  |||||||||||||||    
T  7046909 taacttcacccacttcttctccttctcattaagcttaaaca 7046949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 7029847 - 7029938
Alignment:
Q  165 caaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacac 256  Q
    ||||||||||||||||||  ||||||| ||| | | |||||||||||| ||||||||| |  |||||||||||||||  |||||||||||||    
T  7029847 caaccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacac 7029938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 9170851 - 9170941
Alignment:
Q  165 caaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 255  Q
    ||||||||||||||||||  ||||||||||| | |  || |||||||| ||||||||| |  |||||||||||||||  ||||||||||||    
T  9170851 caaccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 9170941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 7012788 - 7012944
Alignment:
Q  105 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaac------cccaagaacaaaactatatcccctaaatta 198  Q
    ||||||| |||||||||||| ||||||||||||| ||||| | ||||||||  | || | ||||      |||||||||||||   |||| |||||| |     
T  7012788 gatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaaactt 7012887  T
Q  199 gccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 255  Q
    | |||||||||||| ||||||||| |  |||||||||||||||  ||||| ||||||    
T  7012888 gtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttaca 7012944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 255
Target Start/End: Complemental strand, 9159643 - 9159487
Alignment:
Q  105 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat-----taccagaac-aaccccaagaacaaaactatatcccctaaatta 198  Q
    ||||| |||||||||||||| ||||||||||||  |||||||| |||||||      |||||   | |||||||||||||||||  ||||||||||| |     
T  9159643 gatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaactc 9159544  T
Q  199 gccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 255  Q
    |  || |||||||| ||||||||| |  | |||||||||||||  ||||||||||||    
T  9159543 gttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttaca 9159487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 41985602 - 41985719
Alignment:
Q  105 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaac 204  Q
    |||||||||||| ||||||  |||| |||||||| ||||||||||||||||  | ||      |||||||||||||||| ||||||||||| | ||||||    
T  41985602 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 41985701  T
Q  205 ttcacccatttcttctcc 222  Q
    || |||||||||||||||    
T  41985702 ttgacccatttcttctcc 41985719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 9617610 - 9617489
Alignment:
Q  100 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaa-gaacaaaactatatcccctaaatta 198  Q
    |||| |||||||||||||||||||| ||||||||||||  ||||||||||||||||| | ||   ||  | ||| |||||||||  |||||||||||||     
T  9617610 ataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaaca-tccattcacaaggaacaaaaccctatcccctaaattt 9617512  T
Q  199 gccaacttcacccatttcttctc 221  Q
      |||||||||||||||||||||    
T  9617511 ttcaacttcacccatttcttctc 9617489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 9448307 - 9448436
Alignment:
Q  124 ggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctccc 223  Q
    |||| |||||||||| ||||||||||||||||  | |||     |||||||||||||||  ||||||||||| | |  |||||||||||||||||||||     
T  9448307 ggaagacacaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctcct 9448406  T
Q  224 ttgcattaagcttaaacacgtcaatcctta 253  Q
    |  ||| |||||||||||| |||| |||||    
T  9448407 tctcataaagcttaaacacatcaaccctta 9448436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 253
Target Start/End: Original strand, 9343823 - 9343967
Alignment:
Q  109 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttca 208  Q
    |||||||| ||| | ||||||||||||||| ||||||||||||||||  | ||      |||||||||||||||  ||||||||||| | |  |||||||    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  209 cccatttcttctcccttgcattaagcttaaacacgtcaatcctta 253  Q
    |||| ||||||||| |  ||| |||||||||||| |||| |||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaaccctta 9343967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 9425542 - 9425598
Alignment:
Q  100 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 156  Q
    |||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9425542 ataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaat 9425598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 9397762 - 9397810
Alignment:
Q  108 gacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 156  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  9397762 gacacaattccctttggcaacacacaaatccaaagctgaagcggaaaat 9397810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 9407343 - 9407391
Alignment:
Q  108 gacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 156  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9407343 gacacaattccctttggcaacacacaaatccgaagctgaagcagaaaat 9407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 9494955 - 9494900
Alignment:
Q  100 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 155  Q
    |||| |||||||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  9494955 ataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaa 9494900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 9395298 - 9395383
Alignment:
Q  170 ccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 255  Q
    ||||||||||||| | ||| |||||||||| |||||||||||| || |||| | |  ||| |||| ||||||| ||||||||||||    
T  9395298 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 9395383  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 41980891 - 41980944
Alignment:
Q  168 ccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctc 221  Q
    |||||||||||||||| ||||||||||| | | |||||| ||||||||||||||    
T  41980891 ccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctc 41980944  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 9352870 - 9352925
Alignment:
Q  100 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 155  Q
    |||| |||||||||||| |||||||||| ||||| |||| || |||||||||||||    
T  9352870 ataaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaa 9352925  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 9377055 - 9377106
Alignment:
Q  100 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcag 151  Q
    |||| |||||||||||| |||||||||| ||||| |||| ||||||||||||    
T  9377055 ataaagatgacacaatttcctttgggaagacacagatcccaagcagaagcag 9377106  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 9655492 - 9655382
Alignment:
Q  112 caattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcaccc 211  Q
    ||||||||||||| ||||||||||||| |||| || ||||||||  | ||       ||||| ||||||||  |||||||||||||   |||||||||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  212 atttcttctcc 222  Q
    |||||||||||    
T  9655392 atttcttctcc 9655382  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 9402335 - 9402403
Alignment:
Q  87 gaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 155  Q
    |||||| | ||| |||| ||||| |||||||||||| ||||||||||||||  | ||||| ||||||||    
T  9402335 gaagatttcatcaataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9402403  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 9420574 - 9420642
Alignment:
Q  87 gaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 155  Q
    |||||| | ||| |||| ||||| |||||||||||| ||||||||||||||  | ||||| ||||||||    
T  9420574 gaagatttcatcaataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9420642  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 9626615 - 9626571
Alignment:
Q  112 caattccctttgggaacacacaaatccaaagcagaagcagaaaat 156  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||    
T  9626615 caattccctttggaaacacacaaatccgaagctgatgcagaaaat 9626571  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 20694448 - 20694393
Alignment:
Q  100 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 155  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  20694448 ataaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaa 20694393  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 18571068 - 18571124
Alignment:
Q  91 atattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaa 147  Q
    ||||||| |||||  || |||||||||||||||| ||||||||||||| ||||||||    
T  18571068 atattattcataaaaatcacacaattccctttggaaacacacaaatccgaagcagaa 18571124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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