View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_64 (Length: 284)
Name: NF14819_low_64
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 7408935 - 7409194
Alignment:
| Q |
1 |
aaatagaagaagcattcaatatttcatgtgcatacaaactaccatcttgtttgtaacatccttgaagagcttgggaatctcatgagctattagatttgga |
100 |
Q |
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| T |
7408935 |
aaatagaagaagcattcaatatttcatgtgcatacaaactaccatcttgtttgtaacgtccttgaagagcttggaaatctcatgagctagtagatttgga |
7409034 |
T |
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| Q |
101 |
tatgtcagtgaacatatacttgaactatcccttcttctatttgtagccttccttcttatgcttcaagatctgcagcttagaatgttgtctccttacggca |
200 |
Q |
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| T |
7409035 |
tatgtcagtgaacatatacttgaactatcccttcttctatttgtagccttccttcttatgcttcaagatctgcagcttagaatgttgtctccttacggca |
7409134 |
T |
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| Q |
201 |
atttcgcaagtcgacatattccaatgaaactaggaccggtcgctgaaggggttgttcttg |
260 |
Q |
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| T |
7409135 |
atttcgcaagtcgacatattccaatgaaactaggacagttctctcaaggggttgttcttg |
7409194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 7422752 - 7422843
Alignment:
| Q |
62 |
ttgaagagcttgggaatctca-tgagctattagatttggatatgtcagtgaacatatacttgaactatcccttcttctatttgtagccttcc |
152 |
Q |
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||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7422752 |
ttgaagagcttggaaatctcactgagcttgtagatttggatatgtcagtgaacatttacttgaactatcccttcttctatttgtagccttcc |
7422843 |
T |
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