View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_65 (Length: 283)
Name: NF14819_low_65
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 18342180 - 18342377
Alignment:
| Q |
74 |
tagtctaaccaagctcttccggtcccgaccgtagtctaaccaagcgcgcaataataatccttgccaggattcaggcagctgatcaatctcgtgcgctcat |
173 |
Q |
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| T |
18342180 |
tagtctaaccaagctcttccggtcccgaccgtagtctaaacaagcgcgcaataataatccttgccagaattcaggcagctgatcaatctggtgcgctcat |
18342279 |
T |
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| Q |
174 |
acacacgacagtggacttacacattcctcaatgcaaatctatatgtattctcaatcaaaccatgtcacctagtttgagtgccagttaccacaaataac |
271 |
Q |
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| T |
18342280 |
acacacgacagtggacttacacattcctcaatgcaaatctatatgtactctcaatcaaaccatgtcacctaatttgagtgccagttaccacgaataac |
18342377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 18342080 - 18342193
Alignment:
| Q |
5 |
acctaacttcactttgagtccaagtgttataagtcgatcgtccctactcagaatttccagtcccaactatagtctaaccaagctcttccggtcccgaccg |
104 |
Q |
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| T |
18342080 |
acctaacttcacgtggagtccaagtgttataagttgatcgtccctactcagaatatccagtcccaactatagtctaaccaagctcttcctgtcccgaccg |
18342179 |
T |
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| Q |
105 |
tagtctaaccaagc |
118 |
Q |
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| T |
18342180 |
tagtctaaccaagc |
18342193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 16341560 - 16341675
Alignment:
| Q |
3 |
ccacctaacttcactttgagtccaagtgttataagtcgatcgtccctactcagaatttccagtcccaactatagtctaaccaagctcttccggtcccgac |
102 |
Q |
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| T |
16341560 |
ccacctgacttcacaaggagtccaagtgttataagtcgatcgcccctactcagaatatccggtcccgactatagtctaaccaagctcttccggtcccgac |
16341659 |
T |
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| Q |
103 |
cgtagtctaaccaagc |
118 |
Q |
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| T |
16341660 |
catagtctaaccaagc |
16341675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 16341647 - 16341740
Alignment:
| Q |
59 |
ttccagtcccaactatagtctaaccaagctcttccggtccc-gaccgtagtctaaccaagcgcgcaataataatccttgccaggattcaggcag |
151 |
Q |
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| T |
16341647 |
ttccggtcccgaccatagtctaaccaagctcttctggtccccgactatagtctaaccaagcgcgcaataataatcctcatcaggattccggcag |
16341740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 16341738 - 16341793
Alignment:
| Q |
182 |
cagtggacttacacattcctcaatgcaaatctatatgtattctcaatcaaaccatg |
237 |
Q |
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| T |
16341738 |
cagtggacttacacattcctcaatgcaaatctatatgcgctctcaatcaaaccatg |
16341793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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