View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_67 (Length: 281)
Name: NF14819_low_67
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 18341921 - 18341810
Alignment:
| Q |
21 |
tttgagagagcaatgattaagttgaatatgatggatatagatagttaagtctatgtgatggatatagatagttatgtttgatctaagaactacacttcag |
120 |
Q |
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| T |
18341921 |
tttgagagagcaatgattaagttgaatatgatggatatagatagttaagtctatgtgatggatatagatagttatgtttgatctaagaactacacttgag |
18341822 |
T |
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| Q |
121 |
gatgctaaatat |
132 |
Q |
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| T |
18341821 |
gatgctaaatat |
18341810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 276
Target Start/End: Original strand, 22191043 - 22191073
Alignment:
| Q |
246 |
ttaggctaaactacacttttcgtcccctatg |
276 |
Q |
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| T |
22191043 |
ttaggctaaactacacttttcgtcccctatg |
22191073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 16339600 - 16339495
Alignment:
| Q |
143 |
gatatacatcaaaggatggtatatttgtatgactagttgtgtttgttatgtatatattgatgttttacaaacccatcccctttgtgaaacttgtacgtaa |
242 |
Q |
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| T |
16339600 |
gatatccatcaaaggatggtcg-tttgtatgattagttgtgattgtcatgtatatattattgttttacaaactcatccccactgttaaacttgtatgtaa |
16339502 |
T |
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| Q |
243 |
atcttag |
249 |
Q |
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| T |
16339501 |
accttag |
16339495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 16341404 - 16341355
Alignment:
| Q |
21 |
tttgagagagcaatgattaagttgaatatgatggatatagatagttaagt |
70 |
Q |
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| T |
16341404 |
tttgagagagaaataattaagttgaatatgatggatatagatagttaagt |
16341355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 21690414 - 21690443
Alignment:
| Q |
247 |
taggctaaactacacttttcgtcccctatg |
276 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21690414 |
taggctaaactacacttttcgtcccctatg |
21690443 |
T |
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