View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_7 (Length: 571)
Name: NF14819_low_7
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 258 - 556
Target Start/End: Complemental strand, 3272028 - 3271730
Alignment:
| Q |
258 |
acaagatatgtaattcaccttgcagtattgttttggagatagcacattctgtggtcctccatcatattagattctttgtctcacagctcagcatagcgtt |
357 |
Q |
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| T |
3272028 |
acaagatatgtaattcaccttgcaatattgttttggagatagcacattctgtggtcctccatcatattagattctttgtctcacagctcagcatagcgtt |
3271929 |
T |
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| Q |
358 |
ttgtgtttgtttttaacatttgttccatgcattcaccgtttgtccaaatgttagaacatctgcttaaattcaatgtcttaaacaattgtctctatgtgat |
457 |
Q |
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| T |
3271928 |
ttgtgtttgtttttaacatttgttccatgtattcaccgtttgtccaaatgttagaacatctgcttaaattcaatgtcttaaacaattgtctctatgtgat |
3271829 |
T |
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| Q |
458 |
ggaagagtatatattgatcattcacagaggtccagattggatttcaataccattacaaattgaatatgataccataaatgatagtaataaactattcat |
556 |
Q |
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| T |
3271828 |
ggaagagtatatattgatcattcacagagctccagattggatttcaataccattacaaattgaataggataccataaatgatagtaatgaactattcat |
3271730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 3272284 - 3272113
Alignment:
| Q |
65 |
ttgtgttaaccctccggtttttagggaaagaggccctagcaatccggttcggttagaaggtaaataaagtctgaccaataattatttttactagaaatcg |
164 |
Q |
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| T |
3272284 |
ttgtgttaaccctccggtttttaggggaagaggccctagcaatccggttcggttagaaggtaaataaagtctgaccaataattatttctactaggaatcg |
3272185 |
T |
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| Q |
165 |
aacttagtttttcctgaacgattaattctagagagctcattaaccatttgagcaaaatcacttgattaatgg |
236 |
Q |
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| T |
3272184 |
aacttagtttttcctgaacgattaattctagagagctcattaaccatttgaacaaaatcacttgattaatgg |
3272113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 3272336 - 3272301
Alignment:
| Q |
18 |
atatgatgtaaaaaacatgaaaccacactgtttgtc |
53 |
Q |
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| T |
3272336 |
atatgatgtaaaaaacatgaaaccacactgtttgtc |
3272301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 46476972 - 46476900
Alignment:
| Q |
159 |
aaatcgaacttagtttttcctgaacgattaattctaga-gagctcattaaccatttgagcaaaatcacttgatt |
231 |
Q |
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| T |
46476972 |
aaatcgaactttgtttctcctgaacgattcgttctagaggagctcattaacca-ttgagctcaatcacttgatt |
46476900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 577465 - 577417
Alignment:
| Q |
120 |
gaaggtaaataaagtctgaccaataattatttttactagaaatcgaact |
168 |
Q |
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|||||||| |||| ||||||||||||||||||| |||| ||||||||| |
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| T |
577465 |
gaaggtaagtaaaatctgaccaataattattttcactacgaatcgaact |
577417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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