View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_low_72 (Length: 268)

Name: NF14819_low_72
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_low_72
NF14819_low_72
[»] scaffold0135 (1 HSPs)
scaffold0135 (193-252)||(72-131)
[»] chr4 (2 HSPs)
chr4 (193-252)||(9201990-9202049)
chr4 (193-252)||(9200228-9200287)
[»] chr2 (1 HSPs)
chr2 (41-117)||(12072961-12073037)


Alignment Details
Target: scaffold0135 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 72 - 131
Alignment:
Q  193 ataccttttctctatcataacttcatgttcgtttctgtttggatcacacaagtttacata 252  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||| |||  |||||||    
T  72 atacctcttctctatcataacttcatgttcgtttccgtttggatcactcaatgttacata 131  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 9201990 - 9202049
Alignment:
Q  193 ataccttttctctatcataacttcatgttcgtttctgtttggatcacacaagtttacata 252  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||| |||  |||||||    
T  9201990 atacctcttctctatcataacttcatgttcgtttccgtttggatcactcaatgttacata 9202049  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 9200228 - 9200287
Alignment:
Q  193 ataccttttctctatcataacttcatgttcgtttctgtttggatcacacaagtttacata 252  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||| |||  |||||||    
T  9200228 atacctcttctctatcataacttcatgttcgttttcgtttggatcactcaatgttacata 9200287  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 12072961 - 12073037
Alignment:
Q  41 tgcttaggattgtgaatgactttcttatgcttattttttactgtgatgagaaaaagggcaggttttgcatacaaaat 117  Q
    ||||||||||||  |||| ||||| |||||||||| || |||||||| ||||||||  ||||| |||||||||||||    
T  12072961 tgcttaggattgcaaatgtctttcatatgcttattcttgactgtgataagaaaaagaccaggtcttgcatacaaaat 12073037  T

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