View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_77 (Length: 254)
Name: NF14819_low_77
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_77 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 17467543 - 17467780
Alignment:
| Q |
20 |
ctcggcatctcttattataaacagctgtcagacaaagctacaactaaacctaatttttccttcccttatcctacgcttaacttctaatgacggttttacc |
119 |
Q |
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| T |
17467543 |
ctcggcatctcttattataaaccgctgtcagacaaagctacaactaaacctaatttttccttcccttatcctacgcttaacttctaatgacggttttacc |
17467642 |
T |
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| Q |
120 |
ccattaagttccctccatttcatttcaaaattaaaatctgatattccctcctactatgtatcattgtttccatcaacatttaaagctaaaaatgtttcca |
219 |
Q |
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| T |
17467643 |
ccattaagttccctccatttcatttcaaaattaaaatctgatattccctcctactatgtatcattgtttccatcaacatttaaagctaaaaatgtttcca |
17467742 |
T |
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| Q |
220 |
atgcgccatt---acaataaccgaggaagttcatgatc |
254 |
Q |
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| T |
17467743 |
atgcgccattacaacaataaccgaggaagttcatgatc |
17467780 |
T |
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