View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_8 (Length: 565)
Name: NF14819_low_8
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 36 - 565
Target Start/End: Complemental strand, 30059310 - 30058781
Alignment:
| Q |
36 |
ccttgttcctaccgtagtacctcccctgagagtcgacatcccggcggctgcactctacaatgctttactcggcctttccggtcattccctatgtaagtag |
135 |
Q |
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| T |
30059310 |
ccttgttcctaccgtagtacctcccctgagagtcgacatcccggcagctgcactctacaatgctttactcggcctttccggtcattccctatgtaagtag |
30059211 |
T |
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| Q |
136 |
cccttctctagccaccaaaaaccgacttcaaatagtatctaaattaaagagaatctgtgaataatttggatgatattgaagaaacactcatgaaacagtg |
235 |
Q |
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| T |
30059210 |
cccttttctagccaccaaaaaccgacttcaaacagtatctaaattaaagagaatctgtgaataatttggataatattgaagaaacactcatgaaacagtg |
30059111 |
T |
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| Q |
236 |
ttccaatgagtctgaaatatcagttactacagctacacaagaatgacagggtttgactatttgagagtctttcacattaagagacctcttcctaccagat |
335 |
Q |
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| T |
30059110 |
ttccaatgagtctgaaatatcagttactacagctacacaataatgacagggtttgactatttgagagtctttcacattaagagacctcttcctaccagat |
30059011 |
T |
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| Q |
336 |
ttaattaagccaagccaaaagagtatggtgactggaacattggttagctcataagtgaattagatctcctgcaaagaatagatgaaaatgtcaactatgt |
435 |
Q |
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| T |
30059010 |
ttaattaagccaagccaaaagagtatggtgactggaacattggttagctcataagtgaattagaactcctgcaaagaatagatgaaaatgtcaactatgt |
30058911 |
T |
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| Q |
436 |
ggtcggacatatctacaaagcattctatgcagttagtttatctcaataatgtgcttgttaattcattaacacgcaatagaaatttgaatatgcattagga |
535 |
Q |
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| T |
30058910 |
ggtcggatatatctacaaagcattctatgcagttagtttatctcaataatgtgcttgttaattcattaacacgcaatagaaatttgaatatgcattagga |
30058811 |
T |
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| Q |
536 |
gacctctatgcatattcattaacctttgct |
565 |
Q |
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| T |
30058810 |
gacctctatgcatattcattaacctttgct |
30058781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 391 - 523
Target Start/End: Complemental strand, 30061307 - 30061174
Alignment:
| Q |
391 |
tgaattagatctcctgcaaagaatagatgaaaatgtcaactatgtggtc-ggacatatctacaaagcattctatgcagttagtttatctcaataatgtgc |
489 |
Q |
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| T |
30061307 |
tgaattagaaatcctaccaagaatagatgaaaatgtcaactatgtggtgtggaaatatctacaaagcattctatgcagttattttatctcaatattgtgt |
30061208 |
T |
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| Q |
490 |
ttgttaattcattaacacgcaatagaaatttgaa |
523 |
Q |
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| T |
30061207 |
ttgttaattcattaacacgcaatagaaatttgaa |
30061174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 3101362 - 3101436
Alignment:
| Q |
84 |
tgcactctacaatgctttactcggcctttccggtcattccctatgtaagtagcccttctctagccaccaaaaacc |
158 |
Q |
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| T |
3101362 |
tgcacactacaatgctttactctgcctttccagtcagaccctctgtaggtagcccttttcgagccaccaacaacc |
3101436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 25677753 - 25677784
Alignment:
| Q |
1 |
tttacccttctctttagtctgtgcgctatcaa |
32 |
Q |
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| T |
25677753 |
tttacccttctctttagtctgtgcgctatcaa |
25677784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 25672906 - 25672936
Alignment:
| Q |
1 |
tttacccttctctttagtctgtgcgctatca |
31 |
Q |
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| T |
25672906 |
tttacccttctctttagtctgtgcgctatca |
25672936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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