View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_82 (Length: 250)
Name: NF14819_low_82
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 38667260 - 38667137
Alignment:
| Q |
115 |
ttaaaaaagagagttggttatttagattttagtcaaaatttacatactacagtctatacgaatatatctaattttttcagatatatcctgtgaggtgatt |
214 |
Q |
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| T |
38667260 |
ttaaaaaagagagttgtttatttagattttagtcaaaatttacatactacagtctatacgaatatatctaattttttcagatatattctgtgaggtgatt |
38667161 |
T |
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| Q |
215 |
gaaatagaatatgaatacaagatt |
238 |
Q |
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| T |
38667160 |
gaaatagaatatgaatacaagatt |
38667137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 38668339 - 38668428
Alignment:
| Q |
10 |
atttattgaagagcgatttacaagagaaatcaatcactttttgaaggaaccatttcctttcaaaatcaatatttatgcaccatccaaagagt |
101 |
Q |
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| T |
38668339 |
atttattgaagagcgatttacaagagaaaacaatcac-ttttgaagg-atcatttcctttcaaaatcaatatttatgcatcattcaaagagt |
38668428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 38668432 - 38668537
Alignment:
| Q |
132 |
ttatttagattttagtcaaaatttacatactacagtctatacgaatatatct-aattttttcagatatatcctgtgaggtgattgaaatagaatatgaat |
230 |
Q |
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| T |
38668432 |
ttatttagattttagtcaaaatttacgtactacaacctatatgaatatatttcagttttttcagatatattatgtaaggtgattgaaattgaatgtgaat |
38668531 |
T |
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| Q |
231 |
acaaga |
236 |
Q |
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|||||| |
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| T |
38668532 |
acaaga |
38668537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 38674961 - 38674893
Alignment:
| Q |
132 |
ttatttagattttagtcaaaatttacatactacagtctatacgaatatatct-aattttttcagatata |
199 |
Q |
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|||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||| |||| |
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| T |
38674961 |
ttatttagattttagtcaaaatttacatactacaacttaaaagaatatatctaaattttttcaggtata |
38674893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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