View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14819_low_84 (Length: 247)

Name: NF14819_low_84
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14819_low_84
NF14819_low_84
[»] chr2 (3 HSPs)
chr2 (8-239)||(1748095-1748329)
chr2 (91-159)||(29035311-29035379)
chr2 (91-151)||(29141842-29141902)
[»] chr8 (5 HSPs)
chr8 (25-89)||(32017803-32017867)
chr8 (91-146)||(25382950-25383005)
chr8 (91-151)||(8995158-8995218)
chr8 (25-89)||(8995238-8995302)
chr8 (91-151)||(8996534-8996593)
[»] chr5 (3 HSPs)
chr5 (91-159)||(22578845-22578913)
chr5 (91-151)||(20117663-20117723)
chr5 (12-60)||(30049931-30049979)
[»] chr1 (2 HSPs)
chr1 (91-151)||(9246811-9246871)
chr1 (91-159)||(25030431-25030499)
[»] chr7 (2 HSPs)
chr7 (91-140)||(22499693-22499742)
chr7 (91-151)||(4248829-4248889)
[»] chr6 (1 HSPs)
chr6 (91-140)||(7536655-7536704)
[»] chr4 (2 HSPs)
chr4 (92-140)||(9046008-9046056)
chr4 (179-239)||(10393922-10393982)
[»] chr3 (1 HSPs)
chr3 (25-89)||(34661011-34661075)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 1748329 - 1748095
Alignment:
Q  8 agatgaacaatacacgagagatttgaaactcgtgtaaattagaaggtctataatcctctgctaaccgatcaagtataagcatgacttttgaaaccgcaaa 107  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1748329 agatgaataatacacgagagatttgaaactcgttaaaattagaaggtctataatcctctgctaaccgaccaagtataagcatgacttttgaaaccgcaaa 1748230  T
Q  108 aaactaaaacagttgaaaaattatttaaagtcttgcaaagtagatttataatctaatttataac---nnnnnnngggtggaccactacaccactttgtag 204  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||             ||||||||||||||||||||||     
T  1748229 aaactaaaacagttgaaaaattatttaaagtcttgcaaaatagatttataatttaatttataacttttttttttttatggaccactacaccactttgtaa 1748130  T
Q  205 atatttaaataagttgaaaactaaaaccgacacaa 239  Q
    |||||||||||||||||||||||||||||||||||    
T  1748129 atatttaaataagttgaaaactaaaaccgacacaa 1748095  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 29035311 - 29035379
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtagatttataat 159  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||||| ||||||    
T  29035311 acttttgaaaccgcagaaaactataacagttgaaaaattgtttaaagacttgcaaaatagatctataat 29035379  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 29141842 - 29141902
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 151  Q
    ||||||||||||||  |||| |||||  ||||||||||| |||||||||| ||||| ||||    
T  29141842 acttttgaaaccgccgaaaattaaaattgttgaaaaattgtttaaagtctcgcaaaataga 29141902  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 32017803 - 32017867
Alignment:
Q  25 gagatttgaaactcgtgtaaattagaaggtctataatcctctgctaaccgatcaagtataagcat 89  Q
    |||||||||||| | |||||||| |||||||||||| |||| ||||||   ||||||||||||||    
T  32017803 gagatttgaaacccatgtaaatttgaaggtctataaacctccgctaacatgtcaagtataagcat 32017867  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 25382950 - 25383005
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaa 146  Q
    |||||||||||||| |||||||| ||| ||||||||||| || ||||||| |||||    
T  25382950 acttttgaaaccgcgaaaaactataaccgttgaaaaattgttcaaagtctcgcaaa 25383005  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 8995218 - 8995158
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 151  Q
    |||||||||| |||  |||||||||||||||||||||||  | ||||||| ||||| ||||    
T  8995218 acttttgaaatcgctgaaaactaaaacagttgaaaaattgctcaaagtctcgcaaaataga 8995158  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 8995302 - 8995238
Alignment:
Q  25 gagatttgaaactcgtgtaaattagaaggtctataatcctctgctaaccgatcaagtataagcat 89  Q
    |||||||||||| | || ||||| |||||||||||| |||||||||||    |||||||||||||    
T  8995302 gagatttgaaacccatgcaaattcgaaggtctataagcctctgctaacgtgccaagtataagcat 8995238  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 8996593 - 8996534
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 151  Q
    |||||||||||||| |||||||||||||  ||||||||| |||||| ||| ||||| ||||    
T  8996593 acttttgaaaccgccaaaaactaaaaca-ctgaaaaattgtttaaaatctcgcaaaataga 8996534  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 22578845 - 22578913
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtagatttataat 159  Q
    ||||||||||| |  |||||||| ||| ||||||||||| |||||||||| | ||| ||||||||||||    
T  22578845 acttttgaaactgtcaaaaactagaaccgttgaaaaattgtttaaagtctcgtaaaatagatttataat 22578913  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 20117723 - 20117663
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 151  Q
    ||||||||||||||  ||||||||||  |||||||| || |||||||||| ||||| ||||    
T  20117723 acttttgaaaccgccgaaaactaaaatcgttgaaaagttgtttaaagtctcgcaaaataga 20117663  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 30049931 - 30049979
Alignment:
Q  12 gaacaatacacgagagatttgaaactcgtgtaaattagaaggtctataa 60  Q
    |||||||| ||| |||||||||||||| |||||||| ||| ||||||||    
T  30049931 gaacaatatacgggagatttgaaactcatgtaaattcgaaagtctataa 30049979  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 9246811 - 9246871
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 151  Q
    ||||||||||||||  ||||||| ||| ||||||||| | |||||||||||||||| ||||    
T  9246811 acttttgaaaccgcggaaaactataaccgttgaaaaaatgtttaaagtcttgcaaaataga 9246871  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 25030499 - 25030431
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtagatttataat 159  Q
    |||||||||| |||  ||||||| ||| ||| ||||||||||||||||||| |||| ||||| ||||||    
T  25030499 acttttgaaagcgcggaaaactataaccgttaaaaaattatttaaagtcttccaaaatagatctataat 25030431  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 22499693 - 22499742
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtct 140  Q
    ||||||||||||||| ||||||| |||  |||||||||| ||||||||||    
T  22499693 acttttgaaaccgcagaaaactataaccattgaaaaattgtttaaagtct 22499742  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 4248829 - 4248889
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 151  Q
    ||||||||||||||  ||||||||||| |||| |  ||| |||||||||||||||| ||||    
T  4248829 acttttgaaaccgccgaaaactaaaaccgttggaggattgtttaaagtcttgcaaaataga 4248889  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 7536704 - 7536655
Alignment:
Q  91 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtct 140  Q
    ||||||||||||||  ||||||| ||| ||||||||||| ||||||||||    
T  7536704 acttttgaaaccgcggaaaactataaccgttgaaaaattgtttaaagtct 7536655  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 9046008 - 9046056
Alignment:
Q  92 cttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtct 140  Q
    |||||||||||||  ||||||||||   |||||||||||||||||||||    
T  9046008 cttttgaaaccgccgaaaactaaaatcattgaaaaattatttaaagtct 9046056  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 10393982 - 10393922
Alignment:
Q  179 gggtggaccactacaccactttgtagatatttaaataagttgaaaactaaaaccgacacaa 239  Q
    |||||| ||||||||||||||||| || |||| ||| ||  |||| |||||||||||||||    
T  10393982 gggtgggccactacaccactttgtggaaatttgaatcagacgaaacctaaaaccgacacaa 10393922  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 34661075 - 34661011
Alignment:
Q  25 gagatttgaaactcgtgtaaattagaaggtctataatcctctgctaaccgatcaagtataagcat 89  Q
    |||||||||||||| |||||||| ||| |||||||| |||| ||||||    |||||||||||||    
T  34661075 gagatttgaaactcatgtaaattcgaatgtctataagcctccgctaacatgacaagtataagcat 34661011  T

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