View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14819_low_94 (Length: 235)
Name: NF14819_low_94
Description: NF14819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14819_low_94 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39857062 - 39857281
Alignment:
| Q |
1 |
ctcactttcttgaaatgttgattccttcttaataggcaaacacatgacatttggtttaaactttatttcctgcacaacaataggaagaatttactcagaa |
100 |
Q |
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| T |
39857062 |
ctcactttcttgaaatgttgattccttcttaataggcaaacacatgacatttggtttaaactttatttcctgcacaacaataggaagaatttactcagaa |
39857161 |
T |
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| Q |
101 |
acactaaataattgaagttaaccgaagatgccattagaaaaggccctttttgttcttgttggtcacatgccagaatgataaattttcatagaacacgatt |
200 |
Q |
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| T |
39857162 |
acgctaaataattgaagtcaaccgaagatgccattagaaaaggccctttttgttcttgttggtcacatgccagaatgataaattttcatagaacacgatt |
39857261 |
T |
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| Q |
201 |
cactttattcgccattcatc |
220 |
Q |
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| T |
39857262 |
cactttattcgccattcatc |
39857281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39897819 - 39897902
Alignment:
| Q |
1 |
ctcactttcttgaaatgttgattccttcttaataggcaaacacatgacatttggtttaaactttatttcctgcacaacaatagg |
84 |
Q |
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| T |
39897819 |
ctcactttcttgaaatgttaatttctggtaaacaggctcacacatgacatttggttcaaacttaatttcctgcacaacaatagg |
39897902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 39847262 - 39847352
Alignment:
| Q |
8 |
tcttgaaatgttgattccttcttaataggcaaacacatgacatttggtttaaactttatttcctgcacaacaataggaagaatttactcag |
98 |
Q |
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| T |
39847262 |
tcttcaaatgttaatttcttctcaataggaaaacacttgacttttggttcaaatctaatttcctgcacaacaataggcacaatttactcag |
39847352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39864434 - 39864517
Alignment:
| Q |
1 |
ctcactttcttgaaatgttgattccttcttaataggcaaacacatgacatttggtttaaactttatttcctgcacaacaatagg |
84 |
Q |
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||||||||||||||||||| ||| ||| | | |||| |||||||||| |||||| |||| | || ||||||||||||||||| |
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| T |
39864434 |
ctcactttcttgaaatgttaatttcttgtcgacaggctcacacatgacagttggttcaaacgtaatctcctgcacaacaatagg |
39864517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 37465784 - 37465834
Alignment:
| Q |
166 |
catgccagaatgataaattttcatagaacacgattcactttattcgccatt |
216 |
Q |
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| T |
37465784 |
catgcaagaaagataaattttcatagaacatgatgcactttatttgccatt |
37465834 |
T |
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