View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1481_high_3 (Length: 388)
Name: NF1481_high_3
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1481_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 217 - 374
Target Start/End: Original strand, 24156597 - 24156754
Alignment:
| Q |
217 |
aaatccttattttaacagccgcaaatgttactataagctagtataattattaaataatctattttgagatttagaaggtcacatattcaaattggtcttt |
316 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24156597 |
aaatccttatttaaacagctgcaaatgttactataagctagtataattattaaataatctattttgagatttagaatgtcacatattcaaattggtcttt |
24156696 |
T |
|
| Q |
317 |
ttggaagcctccaaaccaaggttggttaaagattaataaggataatgcaatgtcaatt |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24156697 |
ttggaagcctccaaaccaaggttggttaaagattaataaggataatgtaatgtcaatt |
24156754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 46881870 - 46881758
Alignment:
| Q |
40 |
cactgtaacaatcaaccacctatccacaaataccacacgagcaagctccgacaagtttgaatccggcaaccaaaacctccatatatcaacctctaatcga |
139 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||| ||| ||||||||||| || | ||||||||||||| ||||||||| ||||||| |||||| || |
|
|
| T |
46881870 |
cactgtaacaatcaactccccatccacaaacaccgcactagcaagctccggtaacgtcgaatccggcaacctaaacctccacatatcaagctctaactga |
46881771 |
T |
|
| Q |
140 |
tcaagagacaatt |
152 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
46881770 |
tcaagcgacaatt |
46881758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University