View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1481_high_9 (Length: 234)
Name: NF1481_high_9
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1481_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 10158832 - 10158613
Alignment:
| Q |
1 |
ttgtcaaaatgaaggaaattttgttgaagaaattaataaaccaacgctggagtctgagcaacgtaattcaaccgatacaactatctcagatagtgagaca |
100 |
Q |
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| T |
10158832 |
ttgtcaaaatgaaggaaattttgttgaagaaattaataaaccaacgttggagtctgagcaacgtaattcaactgatacaactatctcagatagtgagact |
10158733 |
T |
|
| Q |
101 |
tctaaaccgcaagaggacatacatgaaaaaattgacgagactgcaagagttgatcaatctgagtctgaactaaatgttcgtcaagaaactaatggatcgt |
200 |
Q |
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| T |
10158732 |
tctaaaccgcaagagcacatgcatgaaaaaattgatgagactgcaaaagttgatcaatctgagtctgaacaaaatgttcgtcaagaaactaatggatcgt |
10158633 |
T |
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| Q |
201 |
gtaaatttagtgttggagaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
10158632 |
gtaaatttagtgttggagaa |
10158613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 10158573 - 10158400
Alignment:
| Q |
47 |
ctggagtctgagcaacgtaattcaaccgatacaactatctcagatagtgagacatctaaaccgcaagaggacatacatgaaaaaattgacgagactgcaa |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||||||||||| |||||||||| |
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| T |
10158573 |
ctggagtctgagcaacgtaattcaaccgatacaactatctcagatagtgagatttctaaacctcaagagcacatacctgaaaaaattgatgagactgcaa |
10158474 |
T |
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| Q |
147 |
gagttgatcaatctgagtctgaactaaatgttcgtcaagaaactaatggatcgtgtaaatttagtgttggagaa |
220 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
10158473 |
gagttgatcaatctgagtctgaaaaaaatattcgtcaagaaagtaatggatcgtgtgaatttagtgttggagaa |
10158400 |
T |
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