View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1481_low_10 (Length: 264)
Name: NF1481_low_10
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1481_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 955189 - 955421
Alignment:
| Q |
19 |
ttcttccaataatatgtctctgacaggccgtcctcgtgtcattgtcaacggtgttcgaagaatgagaaccttccactatttctggtgtctcaattgccaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
955189 |
ttcttccaataatatgtctctgacaggccgtcctcgtgtcattgtcaacggtgttcgaagaatgagaaccttccactatttctggtgtctcaattgccaa |
955288 |
T |
|
| Q |
119 |
cgtactgttagaataccatcaacaaataccattcaaaattatggctctttctgtccatattgcttccatcaattgcgttatgaacttgatatatcaaggc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
955289 |
cgtactgttagaataccatcaacaaataccattcaaaattatggctctttctgtccatattgcttccatcaattgcgttatgaacttgatatatcaaggc |
955388 |
T |
|
| Q |
219 |
caagacttctcatgaacgaccctaacaacagaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
955389 |
caagacttctcatgaacgaccctaacaacagaa |
955421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University