View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1481_low_15 (Length: 208)

Name: NF1481_low_15
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1481_low_15
NF1481_low_15
[»] chr8 (2 HSPs)
chr8 (13-184)||(33402589-33402760)
chr8 (114-174)||(596295-596355)
[»] chr6 (3 HSPs)
chr6 (115-167)||(31121319-31121371)
chr6 (124-184)||(32258442-32258502)
chr6 (124-180)||(6631854-6631910)
[»] chr7 (5 HSPs)
chr7 (89-167)||(5922349-5922427)
chr7 (89-167)||(5931480-5931558)
chr7 (95-165)||(10973385-10973455)
chr7 (95-165)||(10999787-10999857)
chr7 (123-185)||(19297666-19297728)
[»] chr4 (1 HSPs)
chr4 (114-174)||(17373893-17373953)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 33402589 - 33402760
Alignment:
Q  13 aatatcaaagtaataagggtgcaagcttccttgccatgtaaatctgcaaaagaataacgttgctccaaacaattgtggcctaaatgaaaatgtgtatctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33402589 aatatcaaagtaataagggtgcaagcttccttgccatgtaaatctgcaaaagaataacgttgctccaaacaattgtggcctaaatgaaaatgtgtaactt 33402688  T
Q  113 cctccaaacgtgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaaaagtgatatttgtaggg 184  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33402689 cctccaaacgtgagtgtgtgaaatccaagatcatcgttttttgatttgcaatgaaaagtgatatttgtaggg 33402760  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 596295 - 596355
Alignment:
Q  114 ctccaaacgtgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaaaagtgat 174  Q
    |||||||| |||||||||||| |||||||||||| | ||| |||||||||| |||||||||    
T  596295 ctccaaacatgagtgtgtgaactccaagatcatcatctttggatttgcaattaaaagtgat 596355  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 31121371 - 31121319
Alignment:
Q  115 tccaaacgtgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaa 167  Q
    ||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||    
T  31121371 tccaaacatgattgtgtgaaatccaagatcatcatttttggatttgcaatgaa 31121319  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 32258442 - 32258502
Alignment:
Q  124 gagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaaaagtgatatttgtaggg 184  Q
    ||||||||||||||||||||| || | ||| ||||||||||||| ||||||||||| ||||    
T  32258442 gagtgtgtgaaatccaagatcttcatctttagatttgcaatgaagagtgatatttgcaggg 32258502  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 6631910 - 6631854
Alignment:
Q  124 gagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaaaagtgatatttgt 180  Q
    ||||||||||||||||||||| || | | | ||||| |||||||||||||| |||||    
T  6631910 gagtgtgtgaaatccaagatcgtcatctctagatttacaatgaaaagtgatgtttgt 6631854  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 5922349 - 5922427
Alignment:
Q  89 ggcctaaatgaaaatgtgtatcttcctccaaacgtgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaa 167  Q
    ||||||||||||||  ||||  || ||| |||| ||| ||||||||||||||||||||| | ||| |||||||||||||    
T  5922349 ggcctaaatgaaaacatgtaaatttctctaaacttgattgtgtgaaatccaagatcatcatcttttgatttgcaatgaa 5922427  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 5931480 - 5931558
Alignment:
Q  89 ggcctaaatgaaaatgtgtatcttcctccaaacgtgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaa 167  Q
    ||||||||||||||| | ||  || ||| |||| ||| ||||||||||||||||||||| | ||| |||||||||||||    
T  5931480 ggcctaaatgaaaatatataaatttctctaaacttgattgtgtgaaatccaagatcatcatcttttgatttgcaatgaa 5931558  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 10973455 - 10973385
Alignment:
Q  95 aatgaaaatgtgtatcttcctccaaacgtgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatg 165  Q
    |||||||| |||||| || ||||||  ||||||||||||||||||||||| || | ||| |||||||||||    
T  10973455 aatgaaaacgtgtatttttctccaattgtgagtgtgtgaaatccaagatcgtcatctttagatttgcaatg 10973385  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 10999857 - 10999787
Alignment:
Q  95 aatgaaaatgtgtatcttcctccaaacgtgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatg 165  Q
    ||||||||||||||| || ||||||  ||||||||||||||||||||||| || | ||| ||||| |||||    
T  10999857 aatgaaaatgtgtatttttctccaattgtgagtgtgtgaaatccaagatcgtcatctttggatttacaatg 10999787  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 19297728 - 19297666
Alignment:
Q  123 tgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaaaagtgatatttgtagggt 185  Q
    |||||||||||||||| | ||| || | ||||||||| ||||||| |||||||||||| ||||    
T  19297728 tgagtgtgtgaaatcctaaatcgtcatctttcgatttacaatgaagagtgatatttgtggggt 19297666  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 17373893 - 17373953
Alignment:
Q  114 ctccaaacgtgagtgtgtgaaatccaagatcatcgtttttcgatttgcaatgaaaagtgat 174  Q
    |||||||| ||||||| |||| |||||||||||| | ||| |||||||||| |||||||||    
T  17373893 ctccaaacatgagtgtatgaactccaagatcatcatctttagatttgcaattaaaagtgat 17373953  T

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