View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1481_low_2 (Length: 442)
Name: NF1481_low_2
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1481_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 48357641 - 48357221
Alignment:
| Q |
15 |
catgtccaaaatcagccactctaacatgcaagttaaagtccaagaaaatgttgctgggcttcaagtcacggtgaataattttgggcttttgctcatgaag |
114 |
Q |
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| T |
48357641 |
catgtccaaaatcagccactctaacatgcaagttaaagtccatgaaaatgttgctgggcttcaagtcacggtgaataattttgggcttttgctcatgaag |
48357542 |
T |
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| Q |
115 |
atactgcatagcttgggctatctctatgacccttgttagtctttctttgaaaggaggaagtggcacaattctatctctgcgtcttttgccaggaccataa |
214 |
Q |
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| T |
48357541 |
atactgcatagcttgggctatctctatgacccttgttagtctttctttgaaaggaggaagtggcacaattctatctctgcgtcttttgccaggaccataa |
48357442 |
T |
|
| Q |
215 |
agccactccttaagtgtggtgcttagatattcagtaacaacccaagcatgattaggagggtcaagacatgcacccattagattaagcacaaacctgtggc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48357441 |
agccactccttaagtgtggtgcttagatattcagtaaccacccaagcatgattaggagggtcaagacatgcacccattagattaagcacaaacctgtggc |
48357342 |
T |
|
| Q |
315 |
gttgctttgagagagtttcaacctcttgagcaaagaattcaacaccgtttgcatttgtgcgaaagaattcaggtgaaatgcacttcactgccacatcaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48357341 |
gttgctttgagagagtttcaacctcttgagcaaagaattcaacaccgtttgcatttgtgcgaaagaattcaggtgaaatgcacttcactgccacatcaaa |
48357242 |
T |
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| Q |
415 |
tccacgccatgttcccctatg |
435 |
Q |
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||||||||||||||||||||| |
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| T |
48357241 |
tccacgccatgttcccctatg |
48357221 |
T |
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