View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1481_low_3 (Length: 405)
Name: NF1481_low_3
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1481_low_3 |
 | |
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| [»] scaffold0955 (2 HSPs) |
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| [»] scaffold0070 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 25384244 - 25383868
Alignment:
| Q |
19 |
caagttgcactaatttagtaatttggtgatccagatcacgaacataaacatgtttcagcttttgcagcacatccatcgcaatttcgtcaacaagttcagc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25384244 |
caagttgcactaatttagtaatttggtgatccagatcacgaacataaacatgtttcagcttttgcagcacatccatcgcaatttcctcaacaagttcagc |
25384145 |
T |
|
| Q |
119 |
ttctgttctgtttatacaaacattttaaaaatcttaaatttccaatagttaatcaaataacattaatatgatnnnnnnnnnttacctgttgatggagcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
25384144 |
ttctgttctgtttatacaaacattttaaaaatcttaaatttccaatagttaatcaaataacattaatatgataaaaaacaattacctgttgatggagcaa |
25384045 |
T |
|
| Q |
219 |
tcccacccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcct |
318 |
Q |
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|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25384044 |
tctcacccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaacattcattgtacttccaaaacgctgctcatgtttaatgaatgcct |
25383945 |
T |
|
| Q |
319 |
cggcataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
395 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25383944 |
cggcataacttcctaattggtgtcgaacatgaaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
25383868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 141 - 395
Target Start/End: Complemental strand, 25692446 - 25692192
Alignment:
| Q |
141 |
ttttaaaaatcttaaatttccaatagttaatcaaataacattaatatgatnnnnnnnnnttacctgttgatggagcaatcccacccagaatggttggctg |
240 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
25692446 |
ttttaaaaatcttatttttctaatagctaatcaaataattttaatatgataaaaaaaaattacctgttgatggagcaatcccaccctgaatggttggctt |
25692347 |
T |
|
| Q |
241 |
cttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggcataacttcctaattggtg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25692346 |
cttctcccaaagcatccctccatttttgcacaatattcattgtactttcaaaacgctgctcatgcttaacaaatgcctcggcataacttcctaattggtg |
25692247 |
T |
|
| Q |
341 |
tcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
25692246 |
tcgaacatggaaaggatcaacttcatagaaaactggaagtataatttgccgtttg |
25692192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 200 - 376
Target Start/End: Complemental strand, 25645937 - 25645761
Alignment:
| Q |
200 |
ttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgc |
299 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||| |
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| T |
25645937 |
ttacctgttgattgagcaatcccacccagaatggttggcaggttctcccaaagcatacctccatttttgcacaatattcattgtacttgcaaaacactgc |
25645838 |
T |
|
| Q |
300 |
tcatgtttaatgaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactgg |
376 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
25645837 |
tcatgtttaatgaatgcctcagcataacttcctaattggtgtcgaacatggaaaggatcgacttcataaaaaactgg |
25645761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 223 - 395
Target Start/End: Complemental strand, 25388697 - 25388525
Alignment:
| Q |
223 |
acccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggc |
322 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| | |
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| T |
25388697 |
acccaaaatggttggctgcttctcccaaagcatccctccatttttgcacaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcaac |
25388598 |
T |
|
| Q |
323 |
ataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
395 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||| |||||||||||| |
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|
| T |
25388597 |
ataacttcctaattggtgtcaaacatggaaaggatcaacttcataaaaaactgggaatataatttgccctttg |
25388525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 25692593 - 25692474
Alignment:
| Q |
19 |
caagttgcactaatttagtaatttggtgatccagatcacgaacataaacatgtttcagcttttgcagcacatccatcgcaatttcgtcaacaagttcagc |
118 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||| |||| |||||||||| | |||| |||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
25692593 |
caagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcagcacatccattgcaatttcctcaacaagttcagc |
25692494 |
T |
|
| Q |
119 |
ttctgttctgtttatacaaa |
138 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
25692493 |
ttctgttctgtttgtacaaa |
25692474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 25602695 - 25602609
Alignment:
| Q |
28 |
ctaatttagtaatttggtgatccagatcacgaacataaacatgtttcagcttttgcagcacatccatcgcaatttcgtcaacaagtt |
114 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||| | | |||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
25602695 |
ctaatttagtaatttgttgatccaagtcaccaacataaagacgattcaaattttgcagcacatccattgcaatttcctcaacaagtt |
25602609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 25389453 - 25389404
Alignment:
| Q |
141 |
ttttaaaaatcttaaatttccaatagttaatcaaataacattaatatgat |
190 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
25389453 |
ttttaaaaatcttatttttctaatagtaaatcaaataacattaatatgat |
25389404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 141 - 395
Target Start/End: Complemental strand, 3458 - 3202
Alignment:
| Q |
141 |
ttttaaaaatcttaaatttccaatagttaatcaaataacattaatatgatnnnnnnnnn-ttacctgttgatggagcaatcccacccagaatggttggct |
239 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3458 |
ttttaaaaatcttatttttctaatagttaatcaaataacattaatatgataataaaaaagttacctgttgatggagcaatcccacccagaatggttggct |
3359 |
T |
|
| Q |
240 |
gcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggcat-aacttcctaattgg |
338 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||| |
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|
| T |
3358 |
gcttctcccaaagcatccctctatttttgcaaaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcagcataaacttcctaattgg |
3259 |
T |
|
| Q |
339 |
tgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| | ||| |||||| ||||| |
|
|
| T |
3258 |
tgtcgaacatggaaaggatcaacttcataaaaatctggcaatataatttgctctttg |
3202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 3666 - 3602
Alignment:
| Q |
77 |
cttttgcagcacatccatcgcaatttcgtcaacaagttcagcttctgttctgtttatacaaacat |
141 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3666 |
cttttgcagcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaacat |
3602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 162 - 376
Target Start/End: Original strand, 39008 - 39224
Alignment:
| Q |
162 |
aatagttaatcaaataacattaatatgatnnnnnnnnn-ttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39008 |
aatagttaatcaaataacattaatatgataatagaaaagttacctgttgatggagcaatgccacccagaatggttggctgcttctcccaaagcatccctc |
39107 |
T |
|
| Q |
261 |
catttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggcat-aacttcctaattggtgtcgaacatggaaaggatca |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39108 |
catttttgcaaaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcagcataaacttcctaattggtgtcgaacatggaaaggatca |
39207 |
T |
|
| Q |
360 |
acttcatagaaaactgg |
376 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
39208 |
acttcataaaaaactgg |
39224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 19535 - 19728
Alignment:
| Q |
202 |
acctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgctc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
19535 |
acctgttgatggagcaatcccacccagaatggttggctgcttttcccaaagcatccctccatttttgcacaatattcattgtacttgcaaaacgctgctc |
19634 |
T |
|
| Q |
302 |
atgtttaatgaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
395 |
Q |
| |
|
||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||| |
|
|
| T |
19635 |
atgcttaacaaatgcctcagcataacttcctaattggtgtcgaacatggaaaggatcgacttcatagaaaactggcactataatttaccctttg |
19728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 19330 - 19452
Alignment:
| Q |
19 |
caagttgcactaatttagtaatttggtgatccagatcacgaacataaacatgtttcagcttttgcagcacatccatcgcaatttcgtcaacaagttcagc |
118 |
Q |
| |
|
|||||||| ||| | |||||||||| ||||||| |||| |||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19330 |
caagttgctctagtatagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcagcacatccatcgcaatttcctcaacaagttcagc |
19429 |
T |
|
| Q |
119 |
ttctgttctgtttatacaaacat |
141 |
Q |
| |
|
|| |||||||||| ||||||||| |
|
|
| T |
19430 |
ttatgttctgtttgtacaaacat |
19452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 38774 - 38838
Alignment:
| Q |
77 |
cttttgcagcacatccatcgcaatttcgtcaacaagttcagcttctgttctgtttatacaaacat |
141 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38774 |
cttttgcagcacacccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaacat |
38838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 16499479 - 16499549
Alignment:
| Q |
200 |
ttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctccatttttgca |
270 |
Q |
| |
|
|||||| ||| | ||||||||||| ||||| | ||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
16499479 |
ttacctattggtagagcaatcccagccagagagattggctgcttctctcaaagcctccctccacttttgca |
16499549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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