View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1481_low_5 (Length: 352)

Name: NF1481_low_5
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1481_low_5
NF1481_low_5
[»] chr2 (1 HSPs)
chr2 (45-336)||(38748769-38749061)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 45 - 336
Target Start/End: Complemental strand, 38749061 - 38748769
Alignment:
Q  45 tgcaatgtatcaaagtacattgcatggacacctctttgtgtattctatacataaaattctatatatcgtgatctagaattttcatgtcacccaaaaccaa 144  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38749061 tgcaatgtatcaaagtacatttcatggacacctctttgtgtattctatacataaaattctatatatcgtgatctagaattttcatgtcacccaaaaccaa 38748962  T
Q  145 aaaggcacggatattgttgaattgagagcttgtaatcgaattacacatagccaaaacattaggccccaatgaattaacaaactgccacataccctctttt 244  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38748961 aagggcacggatattgttgaattgagagcttgtaatcgaattacacatagccaaaacattaggtcccaatgaattaacaaactgccacataccctctttt 38748862  T
Q  245 gcatgttactctcaaatgctacctagccacatacc-ccccttaccatcccttattcccatccttgtcaccattttattttctctttctcaact 336  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38748861 gcatgttactctcaaatgctacctagccacatacccccccttaccatcccttattcccatccttgtcaccattttattttctctttctcaact 38748769  T

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