View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1481_low_6 (Length: 314)
Name: NF1481_low_6
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1481_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 17725115 - 17725049
Alignment:
| Q |
70 |
aagtgggtgtt-tttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattcat |
135 |
Q |
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| T |
17725115 |
aagtgggtgttatttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattcat |
17725049 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 41225996 - 41225946
Alignment:
| Q |
19 |
ctgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
69 |
Q |
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| T |
41225996 |
ctgcaaaacaatattatgcaaaaaaacagagcactccctcaccaactcctc |
41225946 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 36480932 - 36480871
Alignment:
| Q |
8 |
ggtagattattctgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
69 |
Q |
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| T |
36480932 |
ggtacattatcctgcaaaataatattatgcaaaaatacagagctctccttcaccaaatcctc |
36480871 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 45814495 - 45814551
Alignment:
| Q |
13 |
attattctgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
69 |
Q |
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| T |
45814495 |
attatcctgcaaaacaaaattatgctataatacagagcactccctcaccatatcctc |
45814551 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 35407675 - 35407736
Alignment:
| Q |
194 |
atgtcatcaatttaaaatatgtgtgagaataatttaccataagacactaaaaataatgtttttg |
257 |
Q |
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| T |
35407675 |
atgtcatcaatttaaaaaaagtgtgtgattactttaccat--gacactaaaaaaaatgtttttg |
35407736 |
T |
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