View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1481_low_8 (Length: 285)
Name: NF1481_low_8
Description: NF1481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1481_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 1972380 - 1972130
Alignment:
| Q |
16 |
gcaaaggaaattttcaaaatgggaattcaaaatagaacgatagggatgtaaccacaaacctattcattattgtatatcttagaatagcaatatgaaagtt |
115 |
Q |
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| T |
1972380 |
gcaaaggaaatttttaaaatgggaattcaaaatagaacgatagagatgtaaccacaaacctattcattattgtatatcttagaatagcaatatgaaagtt |
1972281 |
T |
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| Q |
116 |
gaagtcacaataaaatctttgttgtatatcatatagtgtagatggattccaatcaaaagcttcaaatcaaccaccaatgtgaaatgggaaaattacattc |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1972280 |
gaagtcacaataaaatctttgttg--tatcatatagtgtagatggattccaatc-aaagcttcaaatcaaccaccaatgtgaaatgggaaaattacattc |
1972184 |
T |
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| Q |
216 |
tcaagaacaatgaaacaaaataacaattggaatttcaatcaaatattttaaaat |
269 |
Q |
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| T |
1972183 |
tcaagaacaatgaaacaaaacaacaattagaatttcaatcaaatattttaaaat |
1972130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 19963439 - 19963359
Alignment:
| Q |
179 |
aaatcaaccaccaatgtgaaatgggaaaattacattctcaagaacaatgaaacaaaataacaattggaatttcaatcaaat |
259 |
Q |
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| T |
19963439 |
aaatgaaccaccaatgtgaaatgggaaaattacattctcaagaacaatgaaacaaaacaacaattagaatttcaatcaaat |
19963359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 19963497 - 19963451
Alignment:
| Q |
179 |
aaatcaaccaccaatgtgaaatgggaaaattacattctcaagaacaa |
225 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19963497 |
aaatgaaccaccaatgtgaaatgggaaaattacattctcaggaacaa |
19963451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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