View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482-Insertion-2 (Length: 486)
Name: NF1482-Insertion-2
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482-Insertion-2 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 198 - 486
Target Start/End: Complemental strand, 6121 - 5834
Alignment:
| Q |
198 |
taagtattaatagtagtattactgttgtggagatgaagaggcaaggttggggtgctgatgggcaagaacggcggtggagaagacgattgttttcctggga |
297 |
Q |
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| T |
6121 |
taagtattaatagtagtattactgttgtggagatgaagaggcaaggttggggtgctgatgggcaagaacggcggtggagaagacgattgttttcctggga |
6022 |
T |
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| Q |
298 |
ggaggaacagttgactgactatgtttctgttagctaacattcnnnnnnngcgggacaatattgtggataaatgagtttcgtttcattattatgatgaagg |
397 |
Q |
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| T |
6021 |
ggaggaacagttgactgactatgtttctgttagctaacattttttttttgcaggacaatattgtgg-taaatgagtttggtttcattattatgatgaagg |
5923 |
T |
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| Q |
398 |
ttataccgtgaaaaggtgcttatcgaattctcactcaagttgagcagccctatattgacattttctcaaatttaatttgaaacaaagtt |
486 |
Q |
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| T |
5922 |
ttataccgtgaaaaggtgcttatcgaattctcattcaagttaagcagccctatattgacattttctcaaatttaatttgaaacaaagtt |
5834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 6273 - 6119
Alignment:
| Q |
8 |
atattcatctgtcatatttgttctgnnnnnnncttgttccgttgtatatgctgctgtatgatccatctttggtgcttgtactcttactcttgataatttt |
107 |
Q |
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| T |
6273 |
atattcatctgtcatatttgttctgtttttttcttgttccgttgtatatgctgctgtatgatccatctttggtgcttgtactcttactcttgataatttt |
6174 |
T |
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| Q |
108 |
tgcacaacttgtgcatgcttcatctttgctccaagaaagcttcaacggagactaa |
162 |
Q |
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| T |
6173 |
tgcacaacttgtgcatgcttcatctttgctccaagaaagcttcaacggagactaa |
6119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 3219813 - 3219853
Alignment:
| Q |
271 |
gtggagaagacgattgttttcctgggaggaggaacagttga |
311 |
Q |
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| T |
3219813 |
gtggagaagacgattcttttcttgggaggaggaacaattga |
3219853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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