View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482-Insertion-3 (Length: 236)
Name: NF1482-Insertion-3
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 23599119 - 23599342
Alignment:
| Q |
7 |
gatagagtgagaagaagaatgtgttatatttataagactttgtatgcatacttggagttaacagaacatagcatcacgtacactttgttcatcagcatca |
106 |
Q |
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| T |
23599119 |
gatagagtgagaagaagaatgtattata------agacattgtatgcatacttggagttaacagaacatagcatcacgtacactttgttcatcagcatca |
23599212 |
T |
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| Q |
107 |
cttttgcactttgtttagttctatcagcaaagttaccaatgttatacactgccagttcggcattgtgcgtgtgtttgtttcttgtactttgtttgagtta |
206 |
Q |
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|||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23599213 |
ctttcgcactttgtttagttttatcagcaaagttacaaatgttatacactgccagttcggcattgtgcgtgtgtttgtttcttgtactttgtttgagtta |
23599312 |
T |
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| Q |
207 |
tatattagctcgttctgtgagtatattgta |
236 |
Q |
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| T |
23599313 |
tatattagctcgttctctgagtatattgta |
23599342 |
T |
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