View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482-Insertion-4 (Length: 196)
Name: NF1482-Insertion-4
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 6100572 - 6100383
Alignment:
| Q |
7 |
acaagcttaccaaaattcttggtctacccttagagttgtgccacatacattgtacatgcattaattttccatggactaagtaaaatctatatatagttca |
106 |
Q |
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| T |
6100572 |
acaagcttaccaaaattcttggtctacccttagagttgtgccacatacattgtacatgcattaattttccatagactaagtaaaatctatatatagttca |
6100473 |
T |
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| Q |
107 |
agacacctcatatcttctagtaattttatagttcaatacctttgtcttatttaccccattcacctatatttaccatgttttcatgaacac |
196 |
Q |
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| T |
6100472 |
agacacctcatatcttctagtaattttatagttcaatacctttgtcttatttaccccattcacctatatttaccatgttttcatgaacac |
6100383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 364231 - 364414
Alignment:
| Q |
18 |
aaaattcttggtctacccttagagttgtgccacatacattgtacatgcattaattttcc-atggactaagtaaaatctatatatagttcaagacacctca |
116 |
Q |
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| T |
364231 |
aaaattcttggtctacctgtagagttgtgccacgtatattatacatgcattaatttttttatagactaagtaaagtctatatatagttcaagacacctca |
364330 |
T |
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| Q |
117 |
tatcttctagtaattttatagttcaatacctttgtcttat----ttaccccattcacctatatttaccatgttttcatgaacac |
196 |
Q |
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| T |
364331 |
tatcttctagtaattttatagttcaatacctttgtcttatttaattaccccattcacctatatttaccatgttttcatgaacac |
364414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 28055336 - 28055395
Alignment:
| Q |
86 |
gtaaaatctatatatagttcaagacacctcatatcttctagtaattttatagttcaatac |
145 |
Q |
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| T |
28055336 |
gtaaaatctatatatagttcaagacacctcatatcttatagtgattttatagttcaatac |
28055395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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