View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14820_high_4 (Length: 400)
Name: NF14820_high_4
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14820_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 47 - 396
Target Start/End: Original strand, 6024755 - 6025104
Alignment:
| Q |
47 |
tattgtaagttttaagcactacaatataaaatcagattgaacgggacacaaattcaatttaggacatgcacacatagggtaagaatctggtttatgaaag |
146 |
Q |
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| T |
6024755 |
tattgtaagttttaagcactgcaatataaaatcagattgaacgggacacaaattcaatttaggacatgcacacataaggtaagaatctggtttatgaaag |
6024854 |
T |
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| Q |
147 |
tcctaaattcataaaactgcaacattactattctcctttatgaccatttttcaccaatcattacaagtacatctattttacagtcaagtgttttgttaat |
246 |
Q |
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| T |
6024855 |
tcctaaattcataaaactgcaacatcactattctcctttatgaccatttttcaccaatcattacaagtacatctattttacagtcaagtgttttgttaat |
6024954 |
T |
|
| Q |
247 |
ggctctctttctgctcatagtctgagagcatcctctatagacattagaaatagacaaggtaggctagaagtgaataacggcatgctgtacatggatgatg |
346 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6024955 |
ggctctctttctgctcatagtctgagagcatgctctatagacattagaaatagacaaggtaggctagaagtgaataacggcatgctgtacatggatgatg |
6025054 |
T |
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| Q |
347 |
ccctggtagttccattctcttcccctgtaaaccatgcttctcacctttgc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6025055 |
ccctggtagttccattctcttcccctgtaaaccatgcttctcacctttgc |
6025104 |
T |
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