View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14820_high_6 (Length: 366)
Name: NF14820_high_6
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14820_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 39 - 354
Target Start/End: Complemental strand, 39901396 - 39901088
Alignment:
| Q |
39 |
gagggaagattggttacacatgaacctgaaaatacatagatatataataataacactagctaggtacgtaatacgtagcacatgtattgtgaattagtgc |
138 |
Q |
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| T |
39901396 |
gagggaagattggttacacatgaaactgaaaatacatagatatataataataacactagctaggtacgta-------gcacatgtatcgtgaattagtgc |
39901304 |
T |
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| Q |
139 |
tagtaatttatttgtgattgatgcagtcgttaaaacttaggatgctaatgcatggggtttgttcaacaattcctggtgcaaaagcagcggcgacggaagc |
238 |
Q |
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| T |
39901303 |
tagtaatttatttgtgattgatgcagtcgttaaaacttaggatgctactgcatggggtttgttcaacaattcctggtgcaaaagcagcggcgacggaagc |
39901204 |
T |
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| Q |
239 |
ctcgacaatcaccaccagtgaaaccttcacctctgcataccgatgcacagttgctgtcacgtgaacatggacccttaaacttgtggctcttagactcgca |
338 |
Q |
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| T |
39901203 |
ctcgacaatcaccaccagtgaaaccttcacctctgcataccgatgcacagttgctgtcacgtgaacatggacccttaaacttgtggctcttagactcgca |
39901104 |
T |
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| Q |
339 |
ccttcgaccctatgct |
354 |
Q |
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| T |
39901103 |
ccttcgaccctctgct |
39901088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 200 - 354
Target Start/End: Complemental strand, 39905079 - 39904925
Alignment:
| Q |
200 |
ttcaacaattcctggtgcaaaagcagcggcgacggaagcctcgacaatcaccaccagtgaaaccttcacctctgcataccgatgcacagttgctgtcacg |
299 |
Q |
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|||||||||| |||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
39905079 |
ttcaacaatttctggtgcaaaagcagcggtgacggacaccccgacaatcaccaccaatgaaaccttcacccctgcataccgatccacagttgctgtcact |
39904980 |
T |
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| Q |
300 |
tgaacatggacccttaaacttgtggctcttagactcgcaccttcgaccctatgct |
354 |
Q |
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|||||| |||||||||||||| |||| ||| || ||||||||||||| |||| |
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| T |
39904979 |
cacacatggtcccttaaacttgtgactctgagattcacaccttcgaccctctgct |
39904925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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